New in Flapjack 0.09.03.09
Flapjack has just been updated to version 0.09.03.09.
NEW: Flapjack now supports the import of supplementary QTL data. NEW: QTLs data files can have any number of additional (optional) numerical columns (LOD, r2, etc). NEW: Added support for graphically rendering QTLs across multiple "tracks". NEW: QTLs can now be colour-coded according to the trait they are associated with. NEW: Flapjack will automatically lay out QTLs over multiple tracks to avoid overlaps. NEW: Added support for mouse interactions (info popups) for QTLs and for moving QTLs between tracks. NEW: QTLs can be clicked on and all markers associated with them with toggle their selection state. NEW: QTLs can be manually moved between tracks by CTRL clicking and dragging. NEW: Added a new front-end to the program that provides quick links to recent projects, help, etc. NEW: Added a QTL summary table with controls to toggle the visibility of individual QTLs. NEW: Added a Filter QTLs dialog to assist in visibility selection based on trait and experiment. NEW: Added toolbar shortcut buttons for inverting the selection state of lines and markers. NEW: Added many new help topics and placeholders for areas still to be included. NEW: Hovering the mouse over a QTL that is drawn under its neighbours will now render that QTL on top. CHG: The Traits folder on the project navigation tree now supports QTL and phenotype trait data. CHG: The similarity colour schemes will now do half-and-half colouring of heterozygotes. CHG: Colour-boxes (such as in the Customize Colours dialog) now render using gradients. CHG: All "floating" dialog boxes (such as Find By Name) will now auto-close when navigating to another view or data set. CHG: Importing an additional set of phenotype traits will now overwrite rather than append the existing set. BUG: Fixed a problem with importing genotype data files that contain non zero length lines that held no data.