barSeed - Barley Seed Development Database

Probe CUST_9771_PI390587928

Source Contig U35_348

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_9771_PI390587928	Hv_44K_v2	GTTGTACTACCATGATGTAAATTACGAGAATTTTGTGCAAAAGAACGGTTCGATTTGTCA	917	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248909.1	977	7e-23	913 - 972	98	59 / 60	plus	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC	MLOC_41838.1	787	7e-23	153 - 212	98	59 / 60	minus	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00433 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
JLOC1	JLOC1_27190.1	765	4e-23	131 - 190	98	59 / 60	minus
JLOC1	JLOC1_48075.1	1269	6e-21	1004 - 1062	97	57 / 59	plus
Harvest21	ABC00837	973	1e-24	24 - 82	100	59 / 59	minus	ABC00837
Harvest21	ABC00628	981	2e-21	904 - 962	97	57 / 59	plus	ABC00628
Harvest35	U35_348	995	3e-25	918 - 977	100	60 / 60	plus
Harvest35	U35_45	998	2e-21	916 - 974	97	57 / 59	plus

Contig Sequence (995 bp)

>U35_348 995 Hv_44K_v2
AAAATCATCTCCACACTCACTCATCTCCTTGAGAACCCATACAATAGACCCTTCCCTTAG
CTTTCCAATGGCGGCAGCCACCATGTCCATCTCCTCCTCGACCTTTGCCGGCAAGACGGT
GAAGAACGTACCATCTTTGGCTCTCTTTGGCGAGGCCCGAGTCACCATGCGCAAGATCGC
AGCAAAGGCAAAGCAAGTTTCCTCCGGCAGCCCATGGTACGGTGCCGACCGTGTGCTCTA
CCTCGGCCCACTCTCCGGTGAGCCCCCGAGCTACCTCACCGGTGAGTTCCCTGGCGACTA
TGGGTGGGACACTGCCGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGGGAGCT
GGAGGTGATCCATTGCCGATGGGCCATGCTCGGGGCACTTGGTTGTGTCTTTCCCGAGTT
GCTTGCTCGCAACGGCGTCAAGTTCGGTGAGGCTGTTTGGTTTAAGGCCGGTTCCCAGAT
CTTTAGTGAGGGTGGTCTCGACTACCTTGGCAACCCAAGCCTCGTCCACGCACAAAGTAT
CCTAGCTATTTGGGCATGCCAGGTGGTGCTCATGGGTGCCGTCGAGGGGTACCGCATTGC
AGGCGGCCCACTCGGTGAGATCGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCTCT
TGGCCTGGCTGAAGACCCTGAGGCATTCGCCGAGCTCAAGGTGAAGGAGATCAAGAATGG
TCGCCTCGCCATGTTCTCAATGTTTGGCTACTTTGTCCAAGCTATCGTCACTGGAAAGGG
CCCACTCGAGAACCTCGCTGACCACATCGCCGACCCCGTCAACAACAATGCATGGGCATT
CGCCACCAACTTTGTCCCCGGCAAGTAAGGTGTCTTGTGACTATGCTCATCATGAGGCAT
GTTGTCCTGTGGTCTGAGTTGTACTACCATGATGTAAATTACGAGAATTTTGTGCAAAAG
AACGGTTCGATTTGTCAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	3e-169	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	0.0
Arabidopsis v10	AT2G34420.1	265	6e-157	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265