barSeed - Barley Seed Development Database

Probe CUST_35730_PI390587928

Source Contig U35_421

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35730_PI390587928	Hv_44K_v2	GGTCTGAGTTGTACTACCATGATGTAAATTACGAGAGTTTTGTGCAAAATAATGGTTTGA	902	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248556.1	1012	2e-24	927 - 986	100	60 / 60	plus	ABC00006 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
MLOC	MLOC_54581.1	1145	2e-24	259 - 318	100	60 / 60	plus	ABC00006 ABC00194 ABC00347 ABC00432 ABC00433 ABC00628 ABC00837 ABC00841 ABC00951 ABC00960 ABC25177 ABC26749 ABC31752 ABC32758 ABC53022
JLOC1	JLOC1_35136.1	431	8e-25	259 - 318	100	60 / 60	plus
Harvest21	ABC32758	543	3e-25	164 - 223	100	60 / 60	minus	ABC32758
Harvest21	ABC00960	324	3e-25	183 - 242	100	60 / 60	plus	ABC00960
Harvest21	ABC00841	967	3e-25	883 - 942	100	60 / 60	plus	ABC00841
Harvest35	U35_421	996	3e-25	903 - 962	100	60 / 60	plus

Contig Sequence (996 bp)

>U35_421 996 Hv_44K_v2
ATCTCCACACTCACTCCTCTTTGAGAACCCATACAGCGGAGACTTCGCTTAGCTTTCCAA
TGGCGGCAGCCACCATGTCCATCTCCTCCTCGACCTTTGCCGGCAAGGCGGTGAAGAATG
TACCATCTTTGGCTCTCTTTGGAGAGGCCCGAGTCACCATGCGCAAGACCGCAGCAAAGG
CGAAGCAGGTTTCCTCCGGCAGCCCATGGTACGGTGCTGACCGTGTGCTCTACCTCGGCC
CACTCTCCGGTGAGCCCCCGAGCTACCTCACTGGTGAGTTCCCTGGCGACTATGGGTGGG
ACACTGCCGGACTTTCAGCTGACCCTGAGACCTTTGCCAAGAACCGGGAGCTGGAGGTGA
TCCATTGCCGATGGGCCATGCTCGGGGCACTTGGTTGTGTCTTTCCTGAGTTGCTCGCCC
GCAACGGCGTCAAGTTCGGTGAGGCTGTTTGGTTCAAGGCCGGCTCCCAGATCTTTAGTG
AGGGTGGTCTCGACTACCTTGGCAACCCAAGCCTCGTCCACGCCCAAAGTATCCTAGCTA
TTTGGGCATGTCAGGTCGTGCTCATGGGCGCCGTCGAGGGGTACCGCATTGCAGGCGGCC
CACTCGGTGAGATCATCGACCCACTCTACCCAGGTGGCAGCTTCGACCCTCTTGGCCTGG
CTGAAGACCCTGAGGCATTCGCCGAGCTCAAGGTGAAGGAGATCAAGAATGGTCGCCTCG
CCATGTTCTCAATGTTTGGCTTCTTTGTCCAAGCCATCGTCACGGGCAAGGGCCCACTCG
AGAACCTCGCTGACCACATCGCCGACCCCGTCAACAACAATGCATGGGCCTTCGCCACCA
ACTTTGTCCCCGGCAAGTAAGGTGTCTTGGGACTGTGCTCACCATGAGGCGTGTTTTCTT
GTGGTCTGAGTTGTACTACCATGATGTAAATTACGAGAGTTTTGTGCAAAATAATGGTTT
GATTTGTCCAAAAAAAAAAAAAAAAATGCATCCGTC

Homology of Contig U35_421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	1e-170	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	2e-180
Arabidopsis v10	AT2G34420.1	265	9e-159	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265