barSeed - Barley Seed Development Database

Probe CUST_25229_PI390587928

Source Contig U35_50282

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_25229_PI390587928	Hv_44K_v2	TACTCTAGATGAGTACTTGGCCTTGTTTTAATGTCATGACATAGTGTGTCTGTTGCTGGT	386	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251133.1	706	2e-24	505 - 564	100	60 / 60	plus	ABC01030 ABC01036 ABC01038 ABC01040 ABC01041 ABC01042 ABC01044 ABC01048 ABC01050 ABC01051 ABC01056 ABC01063 ABC01072 ABC01079 ABC01086 ABC01106 ABC01108 ABC01114 ABC22044 ABC50770
MLOC	MLOC_33664.2	2257	2e-24	1947 - 2006	100	60 / 60	plus	ABC01040
MLOC	MLOC_33664.1	335	2e-24	213 - 272	100	60 / 60	plus	ABC01040
JLOC1	JLOC1_21780.1	740	8e-25	353 - 412	100	60 / 60	plus
Harvest21	ABC52363	446	3e-25	387 - 446	100	60 / 60	plus
Harvest21	ABC01040	801	3e-25	498 - 557	100	60 / 60	plus	ABC01040
Harvest35	U35_50282	446	3e-25	387 - 446	100	60 / 60	plus
Harvest35	U35_13846	1571	3e-25	1259 - 1318	100	60 / 60	plus

Contig Sequence (446 bp)

>U35_50282 446 Hv_44K_v2
CAAGATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGAG
CAGCGACACCATCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTCGTGCTCCGCCT
CCGCGGCGGCATCATCGAGCCCTCGCTCCAGGCCCTCGCCCGCAAGTACAACCAGGAGAA
GATGATCTGCCGCAAGTGCTACGCTAGGCTGCATCCAAGGGCTGTCAACTGCCGCAAGAA
GAAGTGTGGCCACAGCAACCAGCTGAGGCCCAAGAAGAAGATCAAGAACTAGGCTGATTG
TTGCTTTCGTTGTCTGGATAAATCAGTAGACATAAAAATATTTTCCGGTTATCGTTTTGC
TGCTCCTCAGGATGTTGAACCTTGGTTACTCTAGATGAGTACTTGGCCTTGTTTTAATGT
CATGACATAGTGTGTCTGTTGCTGGT

Homology of Contig U35_50282 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None