- Probe CUST_2499_PI390587928
- Source Contig U35_14295
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_2499_PI390587928 | Hv_44K_v2 | GAACCTTAATGCGTGGAGTCGGTGGATGATGTATTGTATTTGATGTAATATGCTATTGAA | 934 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250846.1 | 2265 | 3e-21 | 2184 - 2243 | 97 | 58 / 60 | plus | ABC01497 ABC05171 ABC07805 ABC12128 ABC12988 ABC12989 ABC13209 ABC16799 ABC30943 ABC33341 ABC34978 ABC34989 ABC38349 ABC43152 ABC44562 ABC44566 ABC45569 ABC50849 |
| JLOC1 | JLOC1_1797.1 | 227 | 4e-23 | 161 - 220 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC43152 | 456 | 3e-25 | 43 - 102 | 100 | 60 / 60 | minus | ABC43152 |
| Harvest21 | ABC12989 | 1088 | 3e-25 | 991 - 1050 | 100 | 60 / 60 | plus | ABC12989 |
| Harvest21 | ABC44803 | 528 | 1e-23 | 39 - 98 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC12988 | 1043 | 1e-23 | 945 - 1004 | 98 | 59 / 60 | plus | ABC12988 |
| Harvest21 | ABC01497 | 900 | 1e-23 | 823 - 882 | 98 | 59 / 60 | plus | ABC01497 |
| Harvest21 | ABC45569 | 645 | 6e-22 | 45 - 104 | 97 | 58 / 60 | minus | ABC45569 |
| Harvest21 | ABC50354 | 547 | 8e-21 | 1 - 55 | 98 | 54 / 55 | minus | |
| Harvest35 | U35_44904 | 456 | 3e-25 | 43 - 102 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14295 | 1032 | 3e-25 | 935 - 994 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14309 | 1300 | 1e-23 | 1203 - 1262 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_14300 | 1099 | 1e-23 | 1001 - 1060 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_46038 | 645 | 6e-22 | 45 - 104 | 97 | 58 / 60 | minus | |
| Harvest35 | U35_48516 | 547 | 8e-21 | 1 - 55 | 98 | 54 / 55 | minus | |
| Harvest35 | U35_14308 | 1269 | 8e-21 | 1167 - 1221 | 98 | 54 / 55 | plus |
Contig Sequence (1032 bp)
>U35_14295 1032 Hv_44K_v2 CCCTCTGTGCTCCCGTACGCCGCGACAGACCCGTGCGCTCCCTTCTCCACCTCTCTCGTC AACCTGGATCTGTCCTCCCATCGTCTCCACCAAAGCCAAGCAAAGCAGAGGAACAGGAAT CCCGGTTGAAGGATGACACAGGCGGCGCGGCCGACGTGGGCGTCGGCCAAGGGCGAGAAC GAGCAGGGGGCACCCGCATCTTCGGGCCCTCCGGGAAGTATTCCTCCCGTGACCTTGCTG CCCACACCTCCCTCAAGCCCAGGCACGATCCCCTGTGCCCCATGGAGAATGGCGACAAGG TGGCGGCAGTAGTCACCATGGAAGAAGTCGCAAGAAGATCTACCACGTCGTCTCCATTCC GGGATCTGTCGCCCGCGCCGCCGCCTCCCTGCCCTCTTTGCAGTTGCCGTCGTCCATTGC CGCAGACGCCTCCTCCTCACTGGCGAGATGGTACGACCTCCCCTTACCGCGCTCCAGGAT GCCAAGTTTCAGCTTTCGCCGCCTCCTGCCACTCATGGCGACCGCCGCGTCGCCCCCTCA CCCACCACGCCCGGGACCCCATGGCGGCCCGTGTCTTGGTCCCCATGGCTATCGGCCTTT CCCCCTCGCCCCCATGGCCGGCATCCCCATGGCGGCTGCTGTTGTGTTGAAAAGGGTGCT AAAGTAGACCTTCCATTTTGGCTTGCGCATGGAATGTTGTCTCTGGAACAAGCGGTGTCA ATAAATGTACCTCATTGCTTCACCCAGAAGCGACAATGGCAAGAGCATATTGTGAAGAGG AAGAGGATGAGAAGAAACTTGTGGTTCTCATCCAATCTTTGTGGAACTCTCTTTATGTGT GATTGTGCATTTGTTGGAACCTTTCTCTGTGCACTTGCAACAGTATTCTGTTGTGCACAT GTAAAATTATTTTGATGTGCCTTTGTTAGGCCTTGAACCTTAATGCGTGGAGTCGGTGGA TGATGTATTGTATTTGATGTAATATGCTATTGAAATGAAATATATATTTTATTTGCAAAA AAAAAAAAAAAA
Homology of Contig U35_14295 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |