barSeed - Barley Seed Development Database

Probe CUST_10630_PI390587928

Source Contig U35_45

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_10630_PI390587928	Hv_44K_v2	CATGATGTAAATTACGAGAATTTTGTGCAAAAGAACGGTTCCATTTGTCCACTTCCAAAA	925	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72290.1	1432	7e-23	1155 - 1211	100	57 / 57	plus	ABC00006 ABC00189 ABC00194 ABC00347 ABC00418 ABC00422 ABC00432 ABC00433 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00960 ABC01012 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC48253 ABC53022
JLOC1	JLOC1_48075.1	1269	4e-23	1014 - 1070	100	57 / 57	plus
Harvest21	ABC00837	973	6e-22	13 - 72	97	58 / 60	minus	ABC00837
Harvest35	U35_45	998	3e-25	926 - 985	100	60 / 60	plus

Contig Sequence (998 bp)

>U35_45 998 Hv_44K_v2
GGGGATCTCCACACTCACTCATCTCCTTGAGAACCCATACAGCGGACACTTTTCTTAGCT
TTCCAATGGCGGCAGCCACCATGTCCCTCTCCTCCTCGACCTTTGCCGGCAAGGCGGTCA
AGAACGTACCATCTTTGGCTCTCTTTGGGGAGGCCCGAGTCACCATGCGCAAGACCGCAG
CAAAGGCGAAGCAGGTTTCCTCCGGCAGCCCATGGTACGGTGCTGACCGTGTGCTCTACC
TTGGCCCACTCTCCGGTGAGCCCCCGAGCTACCTCACCGGTGAGTTCCCTGGCGACTATG
GGTGGGACACTGCCGGACTTTCAGCTGACCCTGAGACTTTCGCCAAGAACCGGGAGCTGG
AGGTGATCCATTGCCGATGGGCCATGCTCGGGGCACTTGGTTGTGTCTTCCCTGAGTTGC
TCGCCCGCAACGGCGTCAAGTTCGGTGAGGCTGTTTGGTTCAAGGCCGGCTCCCAGATCT
TTAGTGAAGGTGGTCTCGACTACCTCGGCAACCCCAGCCTCGTCCACGCACAAAGCATCC
TAGCTATCTGGGCATGCCAGGTGGTGCTCATGGGTGCCGTCGAGGGGTACCGCATTGCTG
GCGGCCCACTTGGTGAGATCGTCGACCCACTCTACCCAGGTGGCAGCTTCGACCCTCTTG
GCCTGGCTGAAGACCCTGAGGCATTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGTC
GCCTCGCCATGTTCTCAATGTTTGGCTTCTTTGTCCAAGCTATTGTCACGGGCAAGGGCC
CACTCGAGAACCTCTCTGACCACATCGCCGACCCCGTCAACAACAATGCATGGGCATTCG
CCACCAACTTTGTCCCCGGCAAGTAAGGTGTCTTGGGACTATGCTCACCATGAGGCGTGT
TGTCCTGTGGTCTGAGTTGCACTACCATGATGTAAATTACGAGAATTTTGTGCAAAAGAA
CGGTTCCATTTGTCCACTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_45 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	3e-170	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi4g07380.1	322	0.0
Arabidopsis v10	AT2G34420.1	265	2e-158	\| Symbols: LHB1B2, LHCB1.5 \| photosystem II light harvesting complex gene B1B2 \| chr2:14522716-14523513 REVERSE LENGTH=265