barSeed - Barley Seed Development Database

Probe ABC00668

Source Contig ABC00668

barSeed

Links

Affymetrix Source Sequence (2046 bp)

>ABC00668 2046
TTTTTTTTTTTTTTTTTATTGCGAACAAACTTTTGCCCTCATTTTTCATTTCACATCATA
TCACAACCATAGCGAACGGAACAGGGGAACGGTAACAAGTAGCACGGAACGGTAGCGTCA
CATCTAACGGTAGCCAGAGCATCTCAGAACCTAAGCGATGGAGCGAGATCTAGGGTTACT
CGGGAGCGAGCGATAACACGGTAGACAGGTAAACGAAAAGGATAGATCGTTAACTAGGAT
AACTGGCCGACAAGGGGCCCCACCATTCACTCCCTCCAGTTGCCGCCGCCGGAGCCGCCG
CGGCTGCCACCGTAGCCGCCGCCGCCGCCGCCGTAGCCGCCGCCGCCGCCGTCACGGGTC
CCCTCCCGCCGCCGCCTCCCCTCCGTTCGTTCTTCTTCTTCGAGTTTGTTATCAGCCATG
GGTAAGGAGAAGACTCACATCAACATCGTGGTCATTGGCCACGTCGACTCTGGCAAGTCG
ACCACCACTGGCCACTTGATCTACAAGCTTGGTGGCATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCGTGGGTGCTTGAC
AAGCTCAAGGCTGAGCGTGAGAGAGGTATCACCATCGATATTGCCCTCTGGAAGTTCGAG
ACCACCAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTTCATCAAGAAC
ATGATCACGGGTACCTCCCAGGCTGACTGTGCTGTTCTCATCATTGACTCCACCACTGGT
GGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACACGCGAGCACGCTCTCCTTGCTTTC
ACTCTTGGAGTGAAGCAGATGATCTGCTGCTGCAACAAGATGGACGCCACCACTCCCAAG
TACTCGAAGGCACGTTATGAAGAAATTGTTAAGGAGGTCTCTTCCTACCTGAAGAAGGTC
GGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGGTGACAACATG
ATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGCCCAACCCTGCTTGAGGCGCTTGAC
CAGATCAACGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTTCCCCTCCAGGACGTT
TACAAGATTGGTGGCATTGGAACTGTGCCTGTTGGCCGTGTTGAGACTGGTGTCATCAAG
CCTGGTATGGTTGTGACCTTTGGTCCCACTGGTCTGACAACTGAGGTCAAGTCCGTTGAG
ATGCACCATGAGTCTCTCCTGGAGGCGCTTCCCGGTGACAACGTCGGCTTCAACGTCAAG
AACGTTGCTGTGAAGGATCTGAAGCGTGGGTTTGTTGCATCCAACTCCAAGGATGACCCT
GCCAAGGAGGCAGCCAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATT
GGCAACGGCTACGCTCCAGTGCTGGACTGCCACACCTCACACATTGCTGTCAAGTTTGCT
GAGCTGGTGACCAAGATCGACAGGCGATCAGGTAAGGAGCTGGAGGCCCTGCCCAAGTTC
CTCAAGAATGGTGATGCTGGTATAGTGAAGATGATTCCCACCAAGCCCATGGTTGTGGAG
ACCTTTGCCACTTACCCTCCTCTTGGTCGTTTTGCTGTCCGTGACATGAGGCAAACTGTG
GCTGTTGGTGTCATCAAGGGCGTGGAGAAGAAGGACCCCACCGGAGCCAAGGTGACCAAG
GCTGCCATCAAGAAGAAATAGAGGCGTTTACCTGAATCCATCTATGTCTTGCTTTTGAGA
TCTCTCTAGTAGTTTAGTAAGTTTTGCTACTGTTAGCGCCGTGTGATATGCGCCCTGTTG
ATGTGTCATTTGAGTACTGTCGTGTTATTTCGGCTTTCGGGAAAACATGGATGCTTCTGA
AGACTAATCATTTTATCAAAAAAAAAAAAAAAAAATGCTGCTACTTGTATACTTACCTTT
GATCACCATCTAGGCCAATGCATATCCTAAACAAGCTTCCTTGGATAGTAAAAAAAAAAA
AAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK356416	1570	0.0	6 - 1570	100	1565 / 1565	CUST_42286_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK360723	1628	0.0	86 - 1431	99	1331 / 1347	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK248954.1	1676	0.0	18 - 1414	95	1332 / 1406	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
AK250680.1	1601	0.0	79 - 1428	95	1288 / 1350	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32623 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_67137.1	1587	0.0	67 - 1417	91	1230 / 1351	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
AK252297.1	1638	0.0	76 - 1431	91	1229 / 1356	CUST_14540_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
AK249923.1	1686	0.0	109 - 1459	91	1224 / 1351	CUST_34614_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_31903.2	1510	0.0	140 - 1019	99	879 / 880	CUST_328_PI390587928 CUST_14005_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_2917.1	1189	0.0	1 - 974	96	933 / 974	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_67137.2	1839	0.0	861 - 1839	93	912 / 979	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_31903.3	801	0.0	42 - 666	99	624 / 625	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_67137.3	3183	0.0	861 - 1327	94	437 / 467	CUST_34614_PI390587928 CUST_40086_PI390587928 CUST_32027_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_3679.4	1161	0.0	1 - 747	94	701 / 748	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_31903.1	786	0.0	239 - 786	100	548 / 548	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC49622 ABC49876
AK250462.1	1493	0.0	36 - 1317	77	1001 / 1296	None	ABC00024 ABC00397 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_1840.3	821	0.0	287 - 821	89	476 / 535	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.1	1521	0.0	987 - 1521	89	476 / 535	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.2	1609	0.0	1077 - 1609	89	474 / 533	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_49182.1	1022	0.0	1 - 554	88	487 / 554	CUST_14540_PI390587928 CUST_5199_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
MLOC_3679.3	906	8e-53	1 - 135	95	128 / 135	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_3679.1	779	2e-109	1 - 252	95	240 / 252	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
AK357068	3933	4e-170	503 - 844	98	339 / 345	CUST_3178_PI390587928 CUST_39530_PI390587928 CUST_30112_PI390587928 CUST_35182_PI390587928 CUST_8718_PI390587928 CUST_20789_PI390587928 CUST_39509_PI390587928 CUST_20123_PI390587928	ABC00064 ABC00146 ABC00541 ABC00668 ABC18698 ABC36822 ABC39327 ABC53030
AK363553	2844	4e-165	1 - 338	98	334 / 342	CUST_6349_PI390587928 CUST_35182_PI390587928 CUST_39509_PI390587928	ABC00064 ABC00146 ABC00541 ABC00668 ABC08988 ABC36822 ABC39327 ABC53030
AK373421	854	4e-165	503 - 832	98	327 / 332	CUST_35182_PI390587928 CUST_39509_PI390587928	ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030
AK373804	4193	3e-161	3868 - 4193	98	322 / 328	CUST_11719_PI390587928 CUST_11729_PI390587928 CUST_35182_PI390587928 CUST_39509_PI390587928	ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030
MLOC_24567.1	950	7e-153	1 - 297	99	296 / 297	CUST_12455_PI390587928 CUST_39530_PI390587928 CUST_35182_PI390587928 CUST_39509_PI390587928 CUST_20123_PI390587928	ABC00146 ABC00668 ABC36822 ABC39327
MLOC_48031.1	326	3e-147	1 - 326	96	312 / 326	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_69283.1	399	3e-146	64 - 399	95	319 / 337	CUST_7363_PI390587928	ABC00668 ABC49876
AK375907	709	4e-135	380 - 661	98	277 / 284	CUST_35182_PI390587928 CUST_39509_PI390587928	ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030
MLOC_4488.1	831	2e-134	483 - 828	92	319 / 346	CUST_34456_PI390587928 CUST_15756_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876
MLOC_3679.2	962	2e-128	1 - 298	95	282 / 298	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_2011.1	344	4e-130	5 - 344	92	312 / 340	None	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC49622
MLOC_55117.1	203	6e-99	4 - 203	99	199 / 200	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_40952.1	217	2e-88	7 - 217	95	200 / 211	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_27425.1	178	5e-80	1 - 175	98	171 / 175	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_4930.1	483	2e-78	267 - 483	91	198 / 217	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_12278.1	822	4e-71	646 - 822	94	167 / 177	CUST_6670_PI390587928 CUST_40152_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876