barSeed - Barley Seed Development Database

Probe CUST_11719_PI390587928

Source Contig U35_29379

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_11719_PI390587928	Hv_44K_v2	ACAGCTGCCCGGGAGGACGGACAACGAGGTCAAGAACTACTGGAACACGCGCTTCAAGCG	211	GeneList: lightcyan1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.203	0.520	1.152	1.375	1.128	1.442
Raw	18.349	64.426	139.057	243.445	77.240	108.099

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373804	4193	2e-24	2580 - 2639	100	60 / 60	minus	ABC00064 ABC00146 ABC00541 ABC00668 ABC36822 ABC39327 ABC53030
MLOC	MLOC_70709.1	2194	2e-23	1059 - 1116	100	58 / 58	minus	None
JLOC1	JLOC1_46938.1	1820	8e-25	802 - 861	100	60 / 60	plus
Harvest21	ABC28644	414	3e-25	212 - 271	100	60 / 60	plus
Harvest35	U35_29379	414	3e-25	212 - 271	100	60 / 60	plus

Contig Sequence (414 bp)

>U35_29379 414 Hv_44K_v2
TGCTGCTGGACCACGTGCGGCGCCACGGCGAGGGCAACTGGAACGCCGTGCGCCGGGAGA
CCGGGCTGCAGCGCTGCGGCAAGAGCTGCCGGCTCCGGTGGGCCAACCACCTCCGCCCCA
ACCTCCGTAAGGGCCCCTTCTCCCCCGAGGAGGAGCGCCTCATCCTCCGCCTCCACGGCC
TCATCGGCAACAAGTGGGCGCGCATCTCAGCACAGCTGCCCGGGAGGACGGACAACGAGG
TCAAGAACTACTGGAACACGCGCTTCAAGCGCCGGCAGCGCGCCGGCCAGTCGCTCTACC
CGCCGGACGTTGAGCGGGAGATCGCCCTCATGCGCGCCCACAACGTCAACCCGTTCGCCG
ACGCGGACGGCAACGCCCTGGCGCCGCCGTTCTCGGACCCGTTCGCGCTGCCGC

Homology of Contig U35_29379 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g46560.1	448	2e-70	protein\|myb-like DNA-binding domain containing protein, expressed
Brachypodium v1_2	Bradi1g32720.1	392	5e-79
Arabidopsis v10	AT4G26930.1	389	4e-53	\| Symbols: MYB97, AtMYB97 \| myb domain protein 97 \| chr4:13527770-13529172 FORWARD LENGTH=389