- Probe CUST_14530_PI390587928
- Source Contig U35_13814
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_14530_PI390587928 | Hv_44K_v2 | TGAAGAAATTGTTAAGGAGGTCTCTTCCTACCTGAAGAAGGTCGGCTACAACCCTGACAA | 566 | GeneList: skyblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.515 | 0.629 | 2.098 | 2.495 | 1.057 | 0.835 |
| Raw | 3154.863 | 5985.733 | 17595.300 | 33250.147 | 5016.567 | 4305.837 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK356416 | 1570 | 2e-24 | 563 - 622 | 100 | 60 / 60 | plus | ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876 |
| MLOC | AK360723 | 1628 | 2e-24 | 592 - 651 | 100 | 60 / 60 | plus | ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876 |
| MLOC | MLOC_31903.1 | 786 | 2e-24 | 180 - 239 | 100 | 60 / 60 | plus | ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC49622 ABC49876 |
| MLOC | MLOC_31903.2 | 1510 | 2e-24 | 180 - 239 | 100 | 60 / 60 | plus | ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876 |
| JLOC1 | JLOC1_20897.1 | 1510 | 8e-25 | 181 - 240 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00894 | 723 | 3e-25 | 565 - 624 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00887 | 1721 | 3e-25 | 585 - 644 | 100 | 60 / 60 | plus | ABC00887 |
| Harvest21 | ABC00668 | 2046 | 3e-25 | 918 - 977 | 100 | 60 / 60 | plus | ABC00668 |
| Harvest21 | ABC00645 | 663 | 1e-24 | 558 - 616 | 100 | 59 / 59 | plus | |
| Harvest21 | ABC01005 | 1813 | 2e-21 | 969 - 1024 | 98 | 55 / 56 | minus | |
| Harvest35 | U35_13814 | 725 | 3e-25 | 567 - 626 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13812 | 1712 | 3e-25 | 585 - 644 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13692 | 1715 | 3e-25 | 568 - 627 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13708 | 1908 | 2e-21 | 790 - 845 | 98 | 55 / 56 | plus |
Contig Sequence (725 bp)
>U35_13814 725 Hv_44K_v2 GCAGTCCCATCCCGCCGCCGCCTCCCCTCCCCTCCCCTCCGTTCGTCTTCGAGTTTGTTA TCAGCCATGGGTAAGGAGAAGACTCACATCAACATCGTGGTCATTGGCCACGTCGACTCT GGCAAGTCGACGACCACTGGCCACTTGATCTACAAGCTTGGTGGCATTGACAAGCGTGTG ATCGAGAGGTTTGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCGTGG GTGCTTGACAAGCTCAAGGCCGAGCGTGAGAGAGGTATCACCATCGATATTGCCCTCTGG AAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTTC ATCAAGAACATGATCACGGGTACCTCCCAGGCTGACTGTGCTGTTCTCATCATTGACTCC ACCACTGGTGGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACACGTGAGCACGCTCTC CTTGCTTTCACTCTTGGAGTGAAGCAGATGATCTGCTGCTGCAACAAGATGGACGCCACC ACTCCCAAGTACTCGAAGGCACGTTATGAAGAAATTGTTAAGGAGGTCTCTTCCTACCTG AAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGGT GACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGCCCAACCCTGCTTGAG GCGCT
Homology of Contig U35_13814 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g08050.1 | 448 | 2e-156 | protein|elongation factor Tu, putative, expressed |
| Brachypodium v1_2 | Bradi1g06860.8 | 326 | 8e-159 | |
| Arabidopsis v10 | AT5G60390.1 | 449 | 1e-155 | GTP binding Elongation factor Tu family protein | chr5:24289226-24290675 FORWARD LENGTH=449 |