barSeed - Barley Seed Development Database

Probe ABC00887

Source Contig ABC00887

barSeed

Links

Affymetrix Source Sequence (1721 bp)

>ABC00887 1721
GCCCCTTTCCCCCTCCCGACCGCCGCCGCCTCATCCTATCGGTTCCCTCTCCTTCCTTCG
AGTTTGGTTTTGTACCCATCAGCCATGGGTAAGGAGAAGACTCACATCAACATCGTGGTC
ATTGGCCACGTCGACTCTGGCAAGTCGACGACCACTGGCCACCTGATCTACAAGCTTGGA
GGCATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCCGCTGAGATGAACAAGAGG
TCATTCAAGTACGCGTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAGAGAGGTATCACC
ATTGATATTGCCCTTTGGAAGTTTGAGACCACCAAGTACTACTGCACCGTCATTGATGCC
CCTGGTCACCGTGACTTCATCAAGAACATGATCACCGGTACCTCCCAGGCTGACTGTGCT
GTTCTCATCATTGACTCCACCACTGGTGGTTTTGAGGCTGGTATCTCCAAGGATGGCCAG
ACACGTGAGCACGCTCTCCTTGCTTTCACTCTTGGAGTGAGGCAGATGATCTGCTGCTGC
AACAAGATGGACGCCACCACTCCCAAGTACTCGAAGGCACGTTATGAAGAAATTGTTAAG
GAGGTCTCTTCCTACCTGAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCC
ATCTCTGGGTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAG
GGCCCAACCCTGCTTGAGGCACTTGACCAGATCAACGAGCCCAAGAGGCCCTCAGACAAG
CCCCTCCGTCTTCCCCTCCAGGACGTTTACAAGATTGGTGGCATTGGAACCGTGCCTGTT
GGCCGTGTTGAGACTGGTGTCATCAAGCCTGGTATGGTTGTGACCTTTGGTCCCACTGGT
CTGACAACTGAGGTCAAGTCCGTTGAGATGCACCATGAGTCTCTCCTGGAGGCGCTTCCC
GGTGACAACGTCGGCTTCAACGTCAAGAACGTTGCTGTGAAGGATCTGAAGCGTGGGTTT
GTTGCATCCAACTCCAAGGATGACCCTGCCAAGGAGGCAGCCAACTTCACCGCCCAGGTC
ATCATCATGAACCACCCTGGTCAGATTGGCAATGGCTACGCTCCAGTGCTGGACTGCCAC
ACCTCACACATTGCTGTCAAGTTTGCTGAGCTGGTGACCAAGATCGACAGGCGATCAGGT
AAGGAGCTGGAGGCCCTGCCCAAGTTCCTCAAGAATGGTGATGCTGGTATAGTGAAGATG
ATTCCCACCAAGCCCATGGTTGTGGAGACCTTTGCCACTTACCCTCCTCTTGGTCGTTTT
GCTGTCCGTGACATGAGGCAAACTGTGGCTGTTGGTGTCATCAAGGGCGTGGAGAAGAAG
GACCCCACCGGCGCCAAGGTGACCAAGGCTGCCATCAAGAAGAAGTAATTTGACAATTGA
TACCCAAATTACTGTTTCAGACACCAAGCAATTTTTAGCGTTGGCTAGAGTTTTGTCAAG
GGCATTGTTCGTACTGGGTATATTTTAGCTGTTCGGCTGTTAGCGCTGCATATTGTGCCC
TTGGTGGTGTCTGTCTTGTGCCTTTTACATACTGTTCTAATGTAAGCTTTGGTGAAACCT
GGATGTTATGAGACTTGATTGTGTCTTTTGATAGCTTGTTGAAAAAAAAAAAAAAAATTT
TATACGTGTAGATGCAATTTTATTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK360723	1628	0.0	10 - 1628	99	1619 / 1620	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK356416	1570	0.0	56 - 1402	99	1332 / 1347	CUST_42286_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK250680.1	1601	0.0	15 - 1424	94	1334 / 1416	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32623 ABC32857 ABC38458 ABC49622 ABC49876
AK248954.1	1676	0.0	64 - 1409	95	1282 / 1346	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_31903.2	1510	0.0	140 - 1257	99	1113 / 1119	CUST_328_PI390587928 CUST_14005_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_67137.1	1587	0.0	63 - 1411	91	1226 / 1349	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
AK252297.1	1638	0.0	81 - 1425	91	1222 / 1345	CUST_14540_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
AK249923.1	1686	0.0	105 - 1453	91	1222 / 1349	CUST_34614_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_2917.1	1189	0.0	1 - 1038	94	981 / 1044	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_67137.2	1839	0.0	857 - 1839	93	911 / 983	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_31903.3	801	0.0	42 - 801	99	756 / 761	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_67137.3	3183	0.0	857 - 1327	93	438 / 471	CUST_34614_PI390587928 CUST_40086_PI390587928 CUST_32027_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_3679.4	1161	0.0	1 - 742	94	696 / 742	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_31903.1	786	0.0	239 - 786	99	545 / 548	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC49622 ABC49876
AK250462.1	1493	0.0	36 - 1317	77	995 / 1296	None	ABC00024 ABC00397 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_1840.3	821	0.0	287 - 821	89	476 / 535	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.1	1521	0.0	987 - 1521	89	476 / 535	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.2	1609	0.0	1077 - 1609	89	474 / 533	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_49182.1	1022	0.0	1 - 548	88	483 / 548	CUST_14540_PI390587928 CUST_5199_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
MLOC_3679.3	906	1e-54	1 - 135	96	129 / 135	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_3679.1	779	1e-109	1 - 252	95	240 / 252	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_48031.1	326	2e-142	1 - 326	95	309 / 326	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_4488.1	831	1e-134	483 - 828	92	319 / 346	CUST_34456_PI390587928 CUST_15756_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876
MLOC_3679.2	962	2e-128	1 - 298	95	282 / 298	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_2011.1	344	2e-128	5 - 344	91	311 / 340	None	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC49622
MLOC_55117.1	203	5e-99	1 - 203	99	201 / 203	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_40952.1	217	8e-87	7 - 217	94	199 / 211	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_27425.1	178	2e-78	1 - 175	97	170 / 175	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_4930.1	483	2e-77	272 - 483	92	194 / 212	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_12278.1	822	5e-69	650 - 822	94	163 / 173	CUST_6670_PI390587928 CUST_40152_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876