barSeed - Barley Seed Development Database

Probe CUST_328_PI390587928

Source Contig U35_47983

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_328_PI390587928	Hv_44K_v2	ACCCGGATGCTATGAGGCTTGGTTTTGTCTTCTAAATAGTCGTTGAATTTTATGCTATGA	-1	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.614	1.713	1.173	0.808	0.326	0.323
Raw	1367.340	1441.592	841.430	909.574	130.063	140.322

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_31903.2	1510	3e-21	1343 - 1402	97	59 / 61	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
JLOC1	JLOC1_20897.1	1510	2e-21	1344 - 1403	97	59 / 61	plus
Harvest21	ABC49622	682	5e-23	6 - 65	98	59 / 60	minus	ABC49622
Harvest35	U35_47983	682	5e-23	6 - 65	98	59 / 60	minus

Contig Sequence (682 bp)

>U35_47983 682 Hv_44K_v2
ACTTNCATAGCATAAAATTCAACGNACTATTTAGAAGACAAAACCAAGCCTCATAGCATC
CGGGTTTCGCAAATGCTCACATTAGATGCATTTGTGTCTTTCAGAAATGCAAAACGAACC
AGTAATAAAATTGCATCTACACGTATAAAATTCAACAAGCTATCAAAAGACACAATCAAG
TCTCATAACATCCAGGTTTCACCAAAGCTTACATTAGAACAGTATGTAAAAGGCACAAGA
CAGACACCACCAAGGGCACAATATGCAGCGCTAACAGCCGAACAGCTAAAATATACCCAG
TACGAACAATGCCCTTGACAAAACTCTAGCCAACGCTAAAAATTGCTTGGTGTCTGAAAC
AGTAATTTGGGTATCAATTGTCAAATTACTTCTTCTTGATGGCAGCCTTGGTCACCTTGG
CGCCGGTGGGGTCCTTCTTCTCCACGCCCTTGATGACACCAACAGCCACAGTTTGCCTCA
TGTCACGGACAGCAAAACGACCAAGAGGAGGGTAAGTGGCAAAGGTCTCCACAACCATGG
GCTTGGTGGGAATCATCTTCACTATACCAGCATCACCATTCTTGAGGAACTTGGGCAGGG
CCTCCAGCTCCTTACCTGATCGCCTGTCGATCTTGGTCACCAGCTCAGCAAACTTGACAG
TAATGTGTGAGGTGTGGCAGTC

Homology of Contig U35_47983 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None