barSeed - Barley Seed Development Database

Probe ABC00024

Source Contig ABC00024

barSeed

Links

Affymetrix Source Sequence (2014 bp)

>ABC00024 2014
GCCGAGGCCCCACCCCGCCGCCGCCCCCTCTCGGTTCCTTCTCCATCCTTCCTTGGAGCT
AAGCACGTTCAGCCATGGGTAAGGAGAAGACTCACATCAACATCGTGGTCATTGGACATG
TCGACTCCGGCAAGTCGACCACCACTGGCCATCTGATCTACAAGCTTGGAGGTATTGACA
AGCGTGTGATCGAGAGGTTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGT
ACGCCTGGGTGCTTGACAAGCTCAAGGCCGAGCGTGAGAGGGGTATCACCATTGATATTG
CCCTGTGGAAGTTTGAGACCACCAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACC
GTGACTTCATCAAGAACATGATTACTGGTACCTCCCAGGCTGACTGTGCTGTGCTCATCA
TTGACTCCACCACTGGTGGTTTTGAGGCAGGTATCTCCAAGGATGGCCAGACCCGTGAGC
ATGCCCTCCTTGCTTTCACTCTTGGAGTGAAGCAGATGATCTGCTGCTGCAACAAGATGG
ACGCCACCACTCCCAAGTACTCGAAGGCCCGTTATGAGGAAATCGTCAAGGAAGTCTCTT
CCTACCTGAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGT
TTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGCCCTACCC
TTCTTGAGGCTCTTGACCAGATCAATGAGCCCAAGAGGCCCTCAGACAAGCCCCTGCGTC
TTCCCCTTCAGGATGTTTACAAGATTGGTGGCATTGGAACTGTGCCCGTGGGCCGTGTTG
AGACTGGTGTCATCAAGCCTGGTATGGTTGTTACCTTTGGGCCCACTGGTTTGACAACTG
AGGTCAAGTCTGTTGAGATGCACCATGAGTCTCTCCTGGAGGCGCTTCCCGGTGACAATG
TCGGCTTCAATGTCAAGAACGTTGCCGTGAAGGATCTGAAGCGTGGGTTTGTTGCATCCA
ACTCCAAGGATGATCCTGCCAAGGAGGCAGCCAACTTCACCTCCCAGGTCATCATCATGA
ACCACCCTGGTCAGATCGGCAATGGCTATGCCCCAGTGCTGGACTGCCACACCTCCCACA
TTGCTGTCAAGTTTGCTGAGCTGGTGACCAAGATCGACAGGCGATCTGGTAAGGAGCTGG
AGGCGCTGCCCAAGTTCCTCAAGAACGGTGATGCTGGTATCGTGAAGATGATTCCCACCA
AGCCCATGGTTGTGGAGACCTTTGCCACCTACCCTCCTCTTGGCCGTTTTGCCGTGCGTG
ACATGAGACAAACGGTTGCTGTCGGTGTCATCAAGGGCGTGGAGAAGAAGGACCCCACCG
GTGCCAAGGTTACCAAGGCTGCCATCAAGAAGAAATAGGCGCTATCTAGCTGAAGGATTT
TGTTCGCGGTCATTGCTTTTGTTGCTTCAGACTCTTATCCCGGGCGAGCAATGATCTGTC
TGTCGTTTAATTACTGTATTTCTATTCCTGCTTCTGCTAAACTCCTGTGCCCTGAGACTG
ATTTGTTGTGAAATGCAAGTTATTAGATTGCACTTGTTTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAACGCCCTTTTTTTTTTTTTTTGGTTTCACGGATTTGTCACTCCAATTCAAACA
TTAACAGTAGTTCATTACATAGTTTATAGGATAATAAAGATCGGCCTCGATGAAGCACCG
CAGTTCGATGATAATTTCCTAGTCCTTGCTTCCTTTGAGGTTTCCATTCTTAACGGTACT
TGATGAAGCCGATGTCCTTGGCGTTGCTGCGGAAGCACTGCCTGCAGCACATCAGCCCGT
ACTTGCGGATCAGGCCATGCGAGTTGCCGCAGACACGGCAAACCCTGGATCCGGGGCCGT
AGTTCTTGGGGTGCGAGTTCCAGACGTTCGAGTGTCCCATGGCGGCGGCGGCGGCGGCGG
CGAGGCTTGGAAGTTGGGAACTGTAAACCCTACC

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250680.1	1601	0.0	18 - 1601	99	1580 / 1584	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32623 ABC32857 ABC38458 ABC49622 ABC49876
AK248954.1	1676	0.0	63 - 1411	98	1319 / 1349	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
AK360723	1628	0.0	28 - 1431	94	1328 / 1406	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK356416	1570	0.0	57 - 1406	95	1288 / 1350	CUST_42286_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK249923.1	1686	0.0	109 - 1455	92	1239 / 1347	CUST_34614_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_67137.1	1587	0.0	67 - 1413	92	1239 / 1347	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_2917.1	1189	0.0	1 - 1035	99	1029 / 1035	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00887 ABC00929 ABC00995
AK252297.1	1638	0.0	81 - 1427	92	1236 / 1348	CUST_14540_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
MLOC_67137.2	1839	0.0	861 - 1839	93	914 / 979	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_31903.2	1510	0.0	140 - 1019	95	839 / 880	CUST_328_PI390587928 CUST_14005_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_3679.4	1161	0.0	1 - 744	96	714 / 744	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_67137.3	3183	0.0	861 - 1327	94	438 / 467	CUST_34614_PI390587928 CUST_40086_PI390587928 CUST_32027_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_31903.3	801	0.0	42 - 666	95	595 / 625	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_31903.1	786	0.0	239 - 782	95	519 / 544	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC49622 ABC49876
AK250462.1	1493	0.0	36 - 1317	77	1001 / 1294	None	ABC00024 ABC00397 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_1840.3	821	0.0	287 - 821	91	487 / 535	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.1	1521	0.0	987 - 1521	91	487 / 535	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.2	1609	0.0	1077 - 1609	91	485 / 533	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_3679.3	906	8e-53	1 - 135	95	128 / 135	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_49182.1	1022	0.0	1 - 550	89	491 / 550	CUST_14540_PI390587928 CUST_5199_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
MLOC_55124.1	620	0.0	81 - 447	100	367 / 367	CUST_9456_PI390587928	ABC00024 ABC28292 ABC42869
MLOC_3679.1	779	3e-111	1 - 252	96	241 / 252	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_12278.1	822	0.0	464 - 822	100	359 / 359	CUST_6670_PI390587928 CUST_40152_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876
MLOC_3679.2	962	7e-133	1 - 300	95	286 / 300	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_48031.1	326	3e-152	1 - 326	97	315 / 326	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_4488.1	831	3e-147	483 - 827	94	326 / 345	CUST_34456_PI390587928 CUST_15756_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876
MLOC_2011.1	344	3e-142	1 - 344	94	322 / 344	None	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC49622
MLOC_40952.1	217	1e-101	1 - 217	98	212 / 217	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_55117.1	203	3e-87	1 - 203	96	194 / 203	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_27425.1	178	2e-78	1 - 175	97	170 / 175	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_4930.1	483	2e-78	272 - 482	92	194 / 211	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929