barSeed - Barley Seed Development Database

Probe CUST_42286_PI390587928

Source Contig U35_36748

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_42286_PI390587928	Hv_44K_v2	TTCGAGTTTGTTATCAGCCATGGGTAAGGAGAAGACTCACATCAACATCGTGGTCATTGG	26	GeneList: skyblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.894	0.884	2.587	2.724	1.166	0.931
Raw	677.917	977.906	2702.747	4421.557	693.606	599.676

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356416	1570	2e-24	44 - 103	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
Harvest21	ABC32031	390	3e-25	27 - 86	100	60 / 60	plus
Harvest21	ABC00894	723	3e-25	46 - 105	100	60 / 60	plus
Harvest21	ABC00668	2046	3e-25	399 - 458	100	60 / 60	plus	ABC00668
Harvest21	ABC00645	663	3e-25	39 - 98	100	60 / 60	plus
Harvest35	U35_36748	390	3e-25	27 - 86	100	60 / 60	plus
Harvest35	U35_13814	725	3e-25	48 - 107	100	60 / 60	plus
Harvest35	U35_13692	1715	3e-25	49 - 108	100	60 / 60	plus

Contig Sequence (390 bp)

>U35_36748 390 Hv_44K_v2
GGCCTCCCCTCCGTTCGTTCTTCTTCTTCGAGTTTGTTATCAGCCATGGGTAAGGAGAAG
ACTCACATCAACATCGTGGTCATTGGCCACGTCGACTCTGGCAAGTCGACCACCACTGGC
CACTTGATCTACAAGCTTGGTGGCATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAA
GCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCGTGGGTGCTTGACAAGCTCAAGGCT
GAGCGTGAGAGAGGTATCACCATCGATATTGCCCTCTGGTATCTCCAAGGATGGCCAGAC
ACGCGAGCACGCTCTCCTTGCTTTCACTCTTGGAGTGAAGCAGATGATCTGCTGCTGCAA
CAAGATGGACGCCACCACTCCCAAGTACTC

Homology of Contig U35_36748 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None