barSeed - Barley Seed Development Database

Probe ABC00397

Source Contig ABC00397

barSeed

Links

Affymetrix Source Sequence (1766 bp)

>ABC00397 1766
TTCCCCCCCTGCCCGCCGCCGCCCCCTCCTCTCGTCTCCTTCCTTCGAGTTTCAGCCATG
GGTAAGGAGAAGACCCACATCAACATCGTGGTCATTGGCCATGTCGACTCTGGCAAGTCG
ACCACCACTGGCCATCTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGCTTGAC
AAGCTCAAGGCTGAGCGTGAGAGGGGTATCACCATTGATATTGCCCTGTGGAAGTTCGAG
ACCACCAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTTCATCAAGAAC
ATGATTACGGGTACCTCCCAGGCTGACTGTGCTGTGCTCATCATTGACTCCACCACTGGT
GGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCATGCCCTCCTTGCTTTC
ACTCTTGGAGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGACGCCACCACTCCCAAG
TACTCCAAGGCCCGTTATGAGGAAATCGTCAAGGAAGTCTCTTCCTACCTGAAGAAGGTC
GGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGGTGACAACATG
ATTGAGAGGTCCACCAACCTGGACTGGTACAAGGGCCCTACCCTTCTTGAGGCTCTTGAC
CAGATCAATGAGCCCAAGAGGCCCTCAGACAAGCCCCTGCGTCTTCCCCTTCAGGACGTT
TACAAGATTGGTGGCATTGGAACTGTGCCTGTGGGCCGTGTTGAGACTGGTGTCATCAAG
CCTGGTATGGTTGTTACCTTTGGCCCCACCGGTCTGACAACTGAGGTCAAGTCTGTTGAG
ATGCACCACGAGTCTCTCCTGGAGGCGCTTCCTGGTGACAATGTTGGCTTCAACGTCAAG
AATGTTGCCGTGAAGGATCTGAAGCGTGGGTTTGTTGCATCCAACTCCAAGGATGACCCT
GCCAAGGAGGCAGCCAACTTCACCTCCCAGGTCATCATCATGAACCACCCTGGTCAGATC
GGCAACGGCTATGCCCCAGTGCTGGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCT
GAGCTGGTGACCAAGATCGACAGGCGATCTGGTAAGGAGCTGGAGGCGCTGCCCAAGTTC
CTCAAGAACGGTGATGCTGGTATTGTGAAGATGATTCCCACCAAGCCCATGGTTGTGGAA
ACCTTCGCCACCTACCCTCCTCTTGGCCGTTTTGCTGTGCGTGACATGAGACAAACGGTT
GCTGTTGGTGTGATCAAGGGCGTTGAGAAGAAGGATCCCACCGGTGCCAAGGTTACCAAG
GCTGCCATCAAGAAGAAATGAGTGCTCCAGCTTCTGCCATCCAGTTATCTAGCAGAAGTT
TTAGCGTCCAGTCTTTTTTGGAGAATCTTAGTGTATGTTAAGTGTTGTTCCTGGGCGTTG
TTGCACTTTGACTCCTGCACCTGTGTGCGAGCTATTGTGTGTCTTTTAAATACTCTATTT
CGATTCTATTATTGTGCTCTTATCCTAAAAAAAAAAAAAAAAATTTTCAGTCTGTGTTGA
ATGCTAGTAATAGATAGGCATTACCTGCTTTCCCATTTGCAATTTCACTCTGCTATCATG
CAGAGGTGGTTACTGCTTTGTGATGAGCTTGATTCATGCCATAATATTACAGTAGTGATT
TTGCTAGGAAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK248954.1	1676	0.0	16 - 1658	99	1632 / 1652	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
AK250680.1	1601	0.0	78 - 1426	98	1319 / 1349	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32623 ABC32857 ABC38458 ABC49622 ABC49876
AK356416	1570	0.0	6 - 1408	95	1329 / 1405	CUST_42286_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK360723	1628	0.0	87 - 1431	95	1279 / 1346	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_67137.1	1587	0.0	67 - 1416	92	1243 / 1350	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
AK252297.1	1638	0.0	37 - 1430	91	1272 / 1396	CUST_14540_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
AK249923.1	1686	0.0	109 - 1458	92	1237 / 1350	CUST_34614_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_3679.4	1161	0.0	1 - 1086	96	1052 / 1095	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_2917.1	1189	0.0	1 - 975	98	954 / 975	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_67137.2	1839	0.0	861 - 1839	94	918 / 979	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_31903.2	1510	0.0	140 - 1019	95	835 / 880	CUST_328_PI390587928 CUST_14005_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_3679.3	906	2e-54	1 - 135	96	129 / 135	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_67137.3	3183	0.0	861 - 1327	94	440 / 467	CUST_34614_PI390587928 CUST_40086_PI390587928 CUST_32027_PI390587928 CUST_5222_PI390587928 CUST_14011_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_3679.2	962	8e-132	1 - 298	95	284 / 298	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_31903.3	801	0.0	42 - 666	95	593 / 625	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_3679.1	779	6e-113	1 - 252	96	242 / 252	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_31903.1	786	0.0	239 - 782	95	519 / 544	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC49622 ABC49876
AK250462.1	1493	0.0	36 - 1317	77	999 / 1294	None	ABC00024 ABC00397 ABC00668 ABC00887 ABC00929 ABC00995
MLOC_1840.3	821	0.0	307 - 821	92	475 / 515	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.1	1521	0.0	1007 - 1521	92	475 / 515	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_1840.2	1609	0.0	1097 - 1609	92	473 / 513	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_49182.1	1022	0.0	1 - 553	89	494 / 553	CUST_14540_PI390587928 CUST_5199_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929 ABC00995 ABC33344 ABC36785
MLOC_48031.1	326	1e-170	1 - 326	100	326 / 326	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995
MLOC_4488.1	831	1e-144	483 - 828	94	325 / 346	CUST_34456_PI390587928 CUST_15756_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876
MLOC_2011.1	344	5e-139	1 - 344	93	320 / 344	None	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC49622
MLOC_40952.1	217	2e-108	1 - 217	99	216 / 217	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_4930.1	483	7e-88	228 - 482	90	231 / 256	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_55117.1	203	2e-87	4 - 203	96	192 / 200	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00887 ABC00929
MLOC_27425.1	178	2e-78	1 - 175	97	170 / 175	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00887 ABC00929
MLOC_12278.1	822	4e-75	648 - 822	96	168 / 175	CUST_6670_PI390587928 CUST_40152_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876