barSeed - Barley Seed Development Database

Probe CUST_34649_PI390587928

Source Contig U35_13862

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34649_PI390587928	Hv_44K_v2	GTTACTGCTTTGTGATGAGCTTGATTCATGCCATAATATTACAGTAGTGATTTTGCTAGG	1691	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.164	0.996	1.446	1.289	0.549	0.441
Raw	3733.443	4972.420	6267.027	8719.297	1328.479	1151.824

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3679.2	962	2e-24	893 - 952	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC	MLOC_3679.3	906	2e-24	837 - 896	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC	MLOC_3679.4	1161	2e-24	1025 - 1084	100	60 / 60	plus	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
JLOC1	JLOC1_2211.3	859	8e-25	794 - 853	100	60 / 60	plus
JLOC1	JLOC1_2211.2	720	8e-25	655 - 714	100	60 / 60	plus
JLOC1	JLOC1_2211.1	1208	8e-25	1025 - 1084	100	60 / 60	plus
Harvest21	ABC00397	1766	3e-25	1689 - 1748	100	60 / 60	plus	ABC00397
Harvest35	U35_13862	1772	3e-25	1692 - 1751	100	60 / 60	plus

Contig Sequence (1772 bp)

>U35_13862 1772 Hv_44K_v2
GCTTCCTACCATTCCCCCCTGCCCGCCGCCGCCCCCTCCTCTCGTCTCCTTCCTTCGAGT
TTCAGCCATGGGTAAGGAGAAGACCCACATCAACATCGTGGTCATTGGCCATGTCGACTC
TGGCAAGTCGACCACCACTGGCCATCTGATCTACAAGCTTGGAGGTATTGACAAGCGTGT
GATCGAGAGGTTCGAGAAGGAAGCCGCTGAGATGAACAAGAGGTCATTCAAGTACGCCTG
GGTGCTTGACAAGCTCAAGGCTGAGCGTGAGAGGGGTATCACCATTGATATTGCCCTGTG
GAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTGATGCCCCTGGTCACCGTGACTT
CATCAAGAACATGATTACGGGTACCTCCCAGGCTGACTGTGCTGTGCTCATCATTGACTC
CACCACTGGTGGTTTTGAGGCTGGTATCTCCAAGGATGGCCAGACCCGTGAGCATGCCCT
CCTTGCTTTCACTCTTGGAGTGAAGCAGATGATCTGCTGCTGTAACAAGATGGACGCCAC
CACTCCCAAGTACTCCAAGGCCCGTTATGAGGAAATCGTCAAGGAAGTCTCTTCCTACCT
GAAGAAGGTCGGCTACAACCCTGACAAGGTTCCCTTCGTCCCCATCTCTGGGTTTGAGGG
TGACAACATGATTGAGAGGTCCACCAACCTGGACTGGTACAAGGGCCCTACCCTTCTTGA
GGCTCTTGACCAGATCAATGAGCCCAAGAGGCCCTCAGACAAGCCCCTGCGTCTTCCCCT
TCAGGACGTTTACAAGATTGGTGGCATTGGAACTGTGCCTGTGGGCCGTGTTGAGACTGG
TGTCATCAAGCCTGGTATGGTTGTTACCTTTGGCCCCACCGGTCTGACAACTGAGGTCAA
GTCTGTTGAGATGCACCACGAGTCTCTCCTGGAGGCGCTTCCTGGTGACAATGTTGGCTT
CAACGTCAAGAATGTTGCCGTGAAGGATCTGAAGCGTGGGTTTGTTGCATCCAACTCCAA
GGATGACCCTGCCAAGGAGGCAGCCAACTTCACCTCCCAGGTCATCATCATGAACCACCC
TGGTCAGATCGGCAACGGCTATGCCCCAGTGCTGGACTGCCACACCTCCCACATTGCTGT
CAAGTTTGCTGAGCTGGTGACCAAGATCGACAGGCGATCTGGTAAGGAGCTGGAGGCGCT
GCCCAAGTTCCTCAAGAACGGTGATGCTGGTATTGTGAAGATGATTCCCACCAAGCCCAT
GGTTGTGGAAACCTTCGCCACCTACCCTCCTCTTGGCCGTTTTGCTGTGCGTGACATGAG
ACAAACGGTTGCTGTTGGTGTGATCAAGGGCGTTGAGAAGAAGGATCCCACCGGTGCCAA
GGTTACCAAGGCTGCCATCAAGAAGAAATGAGTGCTCCAGCTTCTGCCATCCAGTTATCT
AGCAGAAGTTTTAGCGTCCAGTCTTTTTTGGAGAATCTTAGTGTATGTTAAGTGTTGTTC
CTGGGCGTTGTTGCACTTTGACTCCTGCACCTGTGTGCGAGCTATTGTGTGTCTTTTAAA
TACTCTATTTCGATTCTATTATTGTGCTCTTATCCTAAAAAAAAAAAAAAAAATCTGTGT
TGAATGCTAGTAATAGATAGGCATTACCTGCTTTCCCATTTGCAAAAAAAAAAAAAAATC
ATGCAGAGGTGGTTACTGCTTTGTGATGAGCTTGATTCATGCCATAATATTACAGTAGTG
ATTTTGCTAGGAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13862 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g08050.1	448	protein\|elongation factor Tu, putative, expressed
Brachypodium v1_2	Bradi4g12750.2	448
Arabidopsis v10	AT5G60390.1	449	GTP binding Elongation factor Tu family protein \| chr5:24289226-24290675 FORWARD LENGTH=449