barSeed - Barley Seed Development Database

Probe ABC32857

Source Contig ABC32857

barSeed

Links

Affymetrix Source Sequence (405 bp)

>ABC32857 405
GCTAAAGAACGGTGATGCTGGTATCGTGAAGATGATTCCCACCAAGCCCATGGTTGTGGA
GACCTTTGCCACCTACCCTCCTCTTGGCCGTTTTGCCGTGCGTGACATGAGACAAACGGT
TGCTGTCGGTGTCATCAAGGGCGTGGAGAAGAAGGACCCCACCGGTGCCAAGGTTACCAA
GGCTGCCATCAAGAAGAAATAGGCGCTATNTANCTGAAGGATTNNGTNCGCGGTCATTGC
TTNNGTTGCTTCAGACTCTTATCCCGGGCGAGCAATGATCTGTCTGTCGTTNAATTACTG
NATTNCTATNCCTGCTTCTGCTAAACTCCTGTGCCCTGAGACTGANNNGNNGNGAAATGC
AAGTTATTAGATTGCACTTGTTTTTCNNAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK250680.1	1601	8e-176	1231 - 1601	95	353 / 371	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00647 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32623 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_12278.1	822	6e-172	462 - 822	95	344 / 361	CUST_6670_PI390587928 CUST_40152_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876
AK248954.1	1676	4e-89	1216 - 1411	97	190 / 196	None	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_3679.2	962	4e-89	417 - 612	97	190 / 196	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_3679.3	906	4e-89	361 - 556	97	190 / 196	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_3679.1	779	4e-89	451 - 646	97	190 / 196	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
MLOC_3679.4	1161	4e-89	549 - 744	97	190 / 196	CUST_34649_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC49622 ABC49876
AK356416	1570	3e-80	1209 - 1406	94	186 / 198	CUST_42286_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
AK360723	1628	5e-78	1238 - 1431	94	182 / 194	CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00576 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_31903.3	801	5e-78	473 - 666	94	182 / 194	None	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_31903.2	1510	5e-78	826 - 1019	94	182 / 194	CUST_328_PI390587928 CUST_14005_PI390587928 CUST_14530_PI390587928	ABC00024 ABC00397 ABC00459 ABC00668 ABC00679 ABC00887 ABC00929 ABC00995 ABC32857 ABC38458 ABC49622 ABC49876
MLOC_4488.1	831	5e-63	483 - 634	95	145 / 152	CUST_34456_PI390587928 CUST_15756_PI390587928	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32857 ABC49622 ABC49876