barSeed - Barley Seed Development Database

Probe CUST_6670_PI390587928

Source Contig U35_38523

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_6670_PI390587928	Hv_44K_v2	TTGCCAAATGGTTGCATGTTTCTGTCTATCTGTTCTTTATTTACAGAGGTTTGGTTTGCA	16	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.840	1.468	1.235	0.723	0.206	0.157
Raw	2032.053	2567.492	1879.503	1704.556	175.261	144.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12278.1	822	7e-23	394 - 453	98	59 / 60	minus	ABC00024 ABC00397 ABC00668 ABC00679 ABC00887 ABC32623 ABC32857 ABC49622 ABC49876
JLOC1	JLOC1_8232.1	666	4e-23	238 - 297	98	59 / 60	minus
Harvest35	U35_38523	500	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (500 bp)

>U35_38523 500 Hv_44K_v2
CTTTTTTTTTTTTTTTTGCAAACCAAACCTCTGTAAATAAAGAACAGATAGACAGAAACA
TGCAACCATTTGGCAAAAGCAGCAGAAAAACAAGAGCAATCTAATAACTTGCATTTCACA
ACAAATCAGTCTCAGGGCACAGGAGTTCAGCCGAAGCAGGAATAGAAATACAGTAATTAA
ACGACAGACAGATCATTGCTCGCCCGGGATAAGAGTCTGAAGCAACAAAAGCAATGACCG
CGAACAAAATCCTTCCGCTAGATAGCGCCTATTTCTTCTTAATGGCAGCCTTGGTAACCT
TGGCACCGGTGGGGTCCTTCTTCTCCACGCCCTTGATGACACCGACAGCAACCGTTTGTC
TCATGTCACGCACGGCAAAACGGCCAAGAGGAGGGTAGGTGGCAAAGGTCTCCACAACCA
TGGGCTTGGTGGGAATCATTTTCACGATACCAGCATCACCGTTCTTGAGGAACTTGGGCA
GCGCCTCCAGCTCCTTACCA

Homology of Contig U35_38523 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None