New in Tablet 1.13.04.22
Tablet has just been updated to version 1.13.04.22.
NEW: Experimentally shifted the bundled runtime to Java 7 for OS X and Linux (Windows builds have used it for some time). BUG: Fixed an issue related to parsing of quality in AFG files. BUG: Fixed an issue with incorrect reads showing up in the visible reads table. BUG: Fixed an issue where CIGAR insertions at the end of reads weren't being displayed by the overlayer. BUG: Fixed the problem where only one of potentially many different Cigar-I events at the same location would be displayed. BUG: Fixed paired read placement where duplicate reads were being produced in cases where a paired read’s mate had the same start position in a different contig. BUG: Fixed silent crashes in the table filter that would cause Tablet to not load a new assembly properly. BUG: Sorting the contigs table with an opened contig no longer disables the ribbon bar. BUG: Fixed an issue where Tablet was failing to display reads due to a scaling error on contig changes. BUG: Tablet no longer fails to navigate to features outwith the current BAM window when using keyboard navigation of the features table. BUG: Dummy read features in BAM files were always being parsed out at at length of 1 as opposed to their actual length. BUG: Fixed CIGAR Inserts displaying more bases than they should. BUG: Ampersands (and other reserved characters) in paths no longer cause Tablet to wipe its recent file list when starting. BUG: Fixed some issues around searching and ignoring gap characters. BUG: Reads weren't having their pair's contig set correctly in SAM files. BUG: Mate position as displayed in the visible reads panel was one base less than it should be.