New in Flapjack 0.10.10.07
Flapjack has just been updated to version 0.10.10.07.
NEW: Projects can now be saved in a new Flapjack-specific binary format (at least 50x faster than the XML format). NEW: Added an option at import time to create a "super" chromosome, containing all the markers across all chromosomes. NEW: Flapjack can now load its project files from local and remote (http) ddresses. NEW: The Bookmark right-click menu option is now disabled unless over a genuine allele. NEW: Redesigned the Import Dialog to include all options (map/genotype data, traits, and QTL) in a single tabbed display. NEW: Genotype data can now be imported in a transposed form (if the advanced option checkbox for it is selected). NEW: Added an additional new tab to support opening example projects from the web server. NEW: Split the additional options from the map/genotype importing dialog into a separate "Advanced Options" dialog. NEW: Updated the line similarity code to score 1 for a homozygous match, and 0.5 for a heterozygous match (previously zero) for cases like A against A/T. NEW: Added summary messages at the end of importing either traits or QTL. NEW: The number of markers found while importing data is now tracked by the progress dialog. NEW: Added a link to the front page to go directly to opening an example project. NEW: Added Java Web Start support. NEW: Added 64bit support and installers. CHG: Changed the internal format for object ID, reducing memory usage and project file size. CHG: Changed the source code to be compatible with Java 6 only. CHG: Marker frequencies are no longer stored in the project file. They are now simply (re)calculated whenever needed. BUG: Fixed the bad number formatting on the chromosome length label (at the top of the screen). BUG: Fixed a bug when (right) clicking on deselected entries in the Find dialog. BUG: Fixed a small issue with the TaskBar icon being stretched on Windows 7 because it wasn't 32x32. BUG: Fixed a rare, but critical error with threading when the progress tracking dialog was active. BUG: The "PowerPoint" wipe when new data sets are first opened now works properly. BUG: Fixed a problem with the line similarity analysis generating NaN values for scores. BUG: Loading a project that was saved after all its views were deleted would result in a silent exception and Flapjack acting as if nothing had been loaded.