- Probe CUST_35770_PI390587928
- Source Contig U35_401
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35770_PI390587928 | Hv_44K_v2 | GTGTTTGTGTAATATCTGGTTATTTTTCAGATTAACCAAGGCATCTTTCTTCTTCCGCTT | 1062 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK372776 | 1096 | 7e-23 | 1037 - 1096 | 98 | 59 / 60 | plus | ABC00006 ABC00074 ABC00189 ABC00194 ABC00418 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00949 ABC00951 ABC00981 ABC01012 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022 |
| MLOC | MLOC_67011.1 | 1952 | 7e-23 | 1508 - 1567 | 98 | 59 / 60 | minus | ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022 |
| MLOC | MLOC_67012.1 | 762 | 7e-23 | 131 - 190 | 98 | 59 / 60 | minus | ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC00981 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022 |
| JLOC1 | JLOC1_44207.1 | 1918 | 4e-23 | 1514 - 1573 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC26853 | 485 | 3e-25 | 359 - 418 | 100 | 60 / 60 | plus | ABC26853 |
| Harvest21 | ABC00190 | 1139 | 3e-25 | 1035 - 1094 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00857 | 253 | 1e-23 | 177 - 236 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00430 | 714 | 1e-23 | 18 - 77 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC00916 | 649 | 8e-21 | 23 - 77 | 98 | 54 / 55 | minus | |
| Harvest35 | U35_401 | 1199 | 3e-25 | 1063 - 1122 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_48117 | 392 | 1e-23 | 67 - 126 | 98 | 59 / 60 | minus | |
| Harvest35 | U35_506 | 689 | 1e-23 | 596 - 655 | 98 | 59 / 60 | plus |
Contig Sequence (1199 bp)
>U35_401 1199 Hv_44K_v2 TCGAGCACTGTTGGCCTACTGACCACCAACGACCACCAGCGCCTCCTACTGTCACTGCCA GCCTCAGCTCACTCGAAGCAAGGCTAGCTAGCTAGCACGCAGCGAGCGATGGCGGCCGCG GCGACCATGGCGCTCTCCTCCCCGGCGATGGCCGGCACCCCGGTGAAGGCCTCCAGGGCG GCGCCCTTCGGCGAGGGCCGCATCACCATGCGCAAGACGGCGGGCAAGCCCAAGGTGGCG GCGTCCAGCAGCCCGTGGTACGGCTCCGACCGCGTGCTCTACCTCGGCCCGCTCTCCGGC GACCCCCCGAGCTACCTCACCGGCGAGTTCCCCGGCGACTACGGCTGGGACACCGCGGGG CTGTCCGCTGACCCCGAGACCTTCGCCAAGAACCGTGAGCTGGAGGTCATCCACTGCCGC TGGGCCATGCTCGGCGCGCTCGGCTGCGTCTTCCCCGAGCTGCTCGCCCGCAACGGCGTC AAGTTCGGCGAGGCCGTGTGGTTCAAGGCCGGCTCCCAGATCTTCAGCGAGGGCGGCCTC GACTACCTCGGCAACCCCAGCCTCGTCCACGCCCAGAGCATCCTCGCCATCTGGGCCTGC CAGGTGGTGCTCATGGGCGCCGTCGAGGGCTACCGCGTCGCCGGCGGCCCGCTCGGCGAG ATCGTCGACCCGCTCTACCCCGGCGGCAGCTTCGACCCCCTGGGCCTCGCCGAGGACCCC GAGGCCTTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGCCGGCTCGCCATGTTCTCC ATGTTTGGCTTCTTCGTCCAGGCCATCGTCACCGGCAAGGGCCCCCTCGAGAACCTCGCC GACCACCTCGCCGACCCCGTCAACAACAACGCCTGGGCCTTCGCCACCAACTTCGTCCCC GGCAAGTGAGCTCAACCTCTAGCGCGCGCGCGCGCGCGCGCGCTTGGCCGACAACTTCAT TGCTGATGGATGCTGCTGTGCTGCATGTCTTTCCGGACTGATAGATGTTGCATGTGAGGG CGAGTCGAGATGATGAGTTGGTGTGTGTACACTAAAAAGATGGTGTTTGTGTAATATCTG GTTATTTTTCAGATTAACCAAGGCATCTTTCTTCTTCCGCTTAAAAAAAAAAAAAAAAAT GGTTTCTCCGAAAAAAAAAAAAAAAAATACATAACTTCTCTGAAAAAAAAAAAAAAAAA
Homology of Contig U35_401 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g52240.1 | 266 | 1e-169 | protein|chlorophyll A-B binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi4g37210.1 | 266 | 0.0 | |
| Arabidopsis v10 | AT2G34420.1 | 265 | 2e-158 | | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265 |