barSeed - Barley Seed Development Database

Probe CUST_5626_PI390587928

Source Contig U35_500

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_5626_PI390587928	Hv_44K_v2	GCTGTCGGTGGCTATGTATATGCACGTACGCATAATATTATACAATAATATGTCAACTAT	776	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249082.1	978	2e-24	871 - 930	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK249588.1	1172	2e-24	1079 - 1138	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK369652	2395	2e-24	2334 - 2393	100	60 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK360618	4810	2e-24	1172 - 1231	100	60 / 60	minus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC	MLOC_45463.1	379	2e-24	209 - 268	100	60 / 60	minus	ABC00626 ABC00859 ABC00934 ABC00965 ABC00966
MLOC	AK250591.1	1609	2e-23	1552 - 1609	100	58 / 58	plus	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
JLOC1	JLOC1_29518.1	404	8e-25	234 - 293	100	60 / 60	minus
Harvest21	ABC51375	377	3e-25	26 - 85	100	60 / 60	minus
Harvest21	ABC45276	485	3e-25	394 - 453	100	60 / 60	plus
Harvest21	ABC26867	538	3e-25	196 - 255	100	60 / 60	plus
Harvest21	ABC01011	417	3e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC00934	492	3e-25	53 - 112	100	60 / 60	minus	ABC00934
Harvest21	ABC00859	1211	3e-25	894 - 953	100	60 / 60	plus	ABC00859
Harvest21	ABC28290	374	2e-22	320 - 374	100	55 / 55	plus
Harvest35	U35_45894	485	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_28159	538	3e-25	196 - 255	100	60 / 60	plus
Harvest35	U35_520	417	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_500	888	3e-25	777 - 836	100	60 / 60	plus
Harvest35	U35_50753	858	1e-24	13 - 71	100	59 / 59	minus
Harvest35	U35_349	1114	5e-23	772 - 827	100	56 / 56	plus

Contig Sequence (888 bp)

>U35_500 888 Hv_44K_v2
TACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGT
CGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACC
AGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAG
GAGGTTTGCCTAGAAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGC
CCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTCAAAATGC
ATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAG
CGGAAGCGAGAATGTCGGCTTGAGTACTCAAGCCAGAGTGCCTCCTTCTAGCAAGCTATA
TACCTACATAGTACAGCTATGGCCCCCACCGTGATGGCCTCGTCGGCCACCTCCGTCGCT
CCTTTCCAGGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCGAACGGTGCT
AGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGGTGCATGCAGGTGTGGCCCATCGAG
GGCATAAACAGCTCACTGACGATGGGCCACATATAAAGTGCCATTGCAGTTTTGTCAACT
CTGACATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTATTTGTTCCTAAGAATATG
TGTATGTCCATGTTCATGTACCAACATGGCTCGAGAAAACATGCTTGTATGTGAATGCTG
TCGGTGGCTATGTATATGCACGTACGCATAATATTATACAATAATATGTCAACTATATAC
GTTTTAATGGTAACCAATGGAAAATATCTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_500 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None