barSeed - Barley Seed Development Database

Probe CUST_40535_PI390587928

Source Contig U35_43614

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40535_PI390587928	Hv_44K_v2	TATGTCCATGTTCATGTACCAACATGAGCTCGAGAAAACATGCTTGTATGTGAATGCTGT	499	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249082.1	978	3e-22	817 - 875	98	59 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK249588.1	1172	3e-22	1025 - 1083	98	59 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK250591.1	1609	3e-22	1498 - 1556	98	59 / 60	plus	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK369652	2395	3e-22	2280 - 2338	98	59 / 60	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK360618	4810	3e-22	1227 - 1285	98	59 / 60	minus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC	MLOC_45463.1	379	3e-22	264 - 322	98	59 / 60	minus	ABC00626 ABC00859 ABC00934 ABC00965 ABC00966
JLOC1	JLOC1_29518.1	404	1e-22	289 - 347	98	59 / 60	minus
Harvest21	ABC40495	559	3e-25	500 - 559	100	60 / 60	plus
Harvest21	ABC45276	485	5e-23	340 - 398	98	59 / 60	plus
Harvest21	ABC26867	538	5e-23	142 - 200	98	59 / 60	plus
Harvest21	ABC01011	417	5e-23	238 - 296	98	59 / 60	plus
Harvest21	ABC00965	505	5e-23	50 - 108	98	59 / 60	minus	ABC00965
Harvest21	ABC00934	492	5e-23	108 - 166	98	59 / 60	minus	ABC00934
Harvest21	ABC00859	1211	5e-23	840 - 898	98	59 / 60	plus	ABC00859
Harvest21	ABC00954	894	2e-21	21 - 78	97	58 / 60	minus
Harvest35	U35_43614	559	3e-25	500 - 559	100	60 / 60	plus
Harvest35	U35_50753	858	5e-23	67 - 125	98	59 / 60	minus
Harvest35	U35_45894	485	5e-23	340 - 398	98	59 / 60	plus
Harvest35	U35_28159	538	5e-23	142 - 200	98	59 / 60	plus
Harvest35	U35_520	417	5e-23	238 - 296	98	59 / 60	plus
Harvest35	U35_500	888	5e-23	723 - 781	98	59 / 60	plus
Harvest35	U35_349	1114	5e-23	718 - 776	98	59 / 60	plus

Contig Sequence (559 bp)

>U35_43614 559 Hv_44K_v2
TACCTACATAGTACAGCTATGGCCCCCACCGTGATGGCCTCGTCGGCCACCTCCGTCGCT
CCTTTCCAGGGGCTCAAGTCCACCGCCGGCCTCCCCGTCAGCCGCCGCTCGAACGGTGCT
AGCCTCGGCAGCGTCAGCAACGGTGGAAGGATCAGGTGCATGCAGGCGTGGCCCATCGAG
GGCATCAAGAAGTTCGAGACCCTGTCTTACTTGCCACCACTCAGCACCGACGCCACACAG
GTGCTCAACGAGGTGGAGGAGGTCAAGAAGGAGTACCCTGACGCGTATGTCCGCATCATC
GGATTCGACAACATGCGTCAGGTGCAGTGCGTCAGCTTCATCGCCTTCAAGCCACCAGGC
TGCGAGGAGTCCGGCAAGGCATAAACAGCTCACTGACGATGGGCCACATATAAAGTGCCA
TTGCAGTTTTGTCAACTCTGACATTGCTTTGGGTTTTCCTTCTCCATTTATCTTTCTTAT
ATGTTCCTAAAAATATGTGTATGTCCATGTTCATGTACCAACATGAGCTCGAGAAAACAT
GCTTGTATGTGAATGCTGT

Homology of Contig U35_43614 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None