- Probe CUST_39507_PI390587928
- Source Contig U35_13927
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_39507_PI390587928 | Hv_44K_v2 | GGGGAAGCCGCTTGCTTCCTGCTTGACTGATGGATTATCAACTAAGCGTTTCTGAAAAAA | 598 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250581.1 | 781 | 2e-24 | 721 - 780 | 100 | 60 / 60 | plus | ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597 |
| MLOC | MLOC_81367.1 | 756 | 7e-23 | 148 - 204 | 100 | 57 / 57 | minus | ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 |
| JLOC1 | JLOC1_54128.1 | 652 | 4e-23 | 464 - 520 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC30208 | 365 | 1e-23 | 12 - 71 | 98 | 59 / 60 | minus | ABC30208 |
| Harvest21 | ABC00655 | 788 | 1e-23 | 712 - 768 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC30991 | 384 | 2e-22 | 330 - 384 | 100 | 55 / 55 | plus | |
| Harvest21 | ABC00115 | 758 | 6e-22 | 705 - 758 | 100 | 54 / 54 | plus | |
| Harvest35 | U35_13950 | 785 | 3e-25 | 712 - 771 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13927 | 669 | 3e-25 | 599 - 658 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_30882 | 384 | 2e-22 | 330 - 384 | 100 | 55 / 55 | plus |
Contig Sequence (669 bp)
>U35_13927 669 Hv_44K_v2 GAGGAAGAAGTCGGTGACCAGGTCCATCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGCAT CGGCCGCTTCCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTCTA CCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTGGAGCTGGCGGGGAACGCGGC CAAGGACAACAAGAAGACCCGCATCGTGCCACGGCACCTGCTGCTGGCCATCCGCAACGA CCAGGAGCTCGGGAGGCTGCTCGCCGGCGTCACAATCGCCCACGGCGGCGTCATCCCCAA CATCAACCCGGTGCTGCTCCCCAAGAAGTCCGCCGAGAAGGCCGAGAAGACCGAGAAGGC CGGCGCCGCCGCCAAGTCGCCCAAGAAGGCCGCCAAGTCCCCCAAGAAGGCCACCAAGGC CTAGATCCGGCCGGCAGTAGCTGTCTCAGCGAACTGACGATGCTCCGTCGGCGGCCCTCG TGTGCGCAGCGTCCCTCTTAATTTAGCTATGTCATGGAGTGTTCATGTTTGATTAGGTGT AGTGGCTGTCTCGGTGGCTGATTTCAATATGTATCATCCTGATGTAATCGCGAACCAAGG GGAAGCCGCTTGCTTCCTGCTTGACTGATGGATTATCAACTAAGCGTTTCTGAAAAAAAA AAAAAAAAA
Homology of Contig U35_13927 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |