barSeed - Barley Seed Development Database

Probe CUST_39452_PI390587928

Source Contig U35_13950

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39452_PI390587928	Hv_44K_v2	TGATTTCAATATGTATCATCCTGATGTAATCGCGAACCAAGGGGAAGCCGCTTGCTTCCT	671	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250581.1	781	2e-24	681 - 740	100	60 / 60	plus	ABC00016 ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
MLOC	MLOC_81367.1	756	2e-24	185 - 244	100	60 / 60	minus	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00414 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208
MLOC	MLOC_81367.2	510	2e-24	28 - 87	100	60 / 60	minus	ABC00028 ABC00054 ABC00085 ABC00096 ABC00118 ABC00137 ABC00145 ABC00158 ABC00167 ABC00188 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC30208 ABC44597
JLOC1	JLOC1_54128.1	652	8e-25	424 - 483	100	60 / 60	plus
Harvest21	ABC30991	384	3e-25	290 - 349	100	60 / 60	plus
Harvest21	ABC00655	788	3e-25	672 - 731	100	60 / 60	plus
Harvest21	ABC30208	365	1e-23	52 - 111	98	59 / 60	minus	ABC30208
Harvest35	U35_30882	384	3e-25	290 - 349	100	60 / 60	plus
Harvest35	U35_13950	785	3e-25	672 - 731	100	60 / 60	plus
Harvest35	U35_13927	669	3e-25	559 - 618	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_13950 785 Hv_44K_v2
GCACAACCAGCCGCCCCAAATCCACCTCTCGCCGGAGCCCCAGCAAGCAAGCAAGGCAAG
GTAGCCAGGAAGATGGACGGCAGCAAGGCGAAGAAGGTGGCGGGGAAGAAGCTGGGCGGG
CCGAGGAAGAAGTCGGTGACCAGGTCCATCAAGGCCGGCCTCCAGTTCCCCGTCGGCCGC
ATCGGCCGCTTCCTCAAGAAGGGCCGCTACGCCCAGCGCGTCGGCTCCGGCGCCCCCGTC
TACCTCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGGTGCTGGAGCTGGCGGGGAACGCG
GCCAAGGACAACAAGAAGACCCGCATCGTGCCACGGCACCTGCTGCTGGCCATCCGCAAC
GACCAGGAGCTCGGGAGGCTGCTCGCCGGCGTCACCATCGCCCACGGCGGCGTCATCCCC
AACATCAACCCGGTGCTGCTCCCCAAGAAGTCCGCCGAGAAGGCCGAGAAGGCCGGCGCC
GCCGCCAAGTCGCCCAAGAAGCCCGCCAAGTCCCCCAAGAAGGCCGCCAAGGCCTAGATC
CGGCCGGCAGTAGCTGTCTCAGCGAACTGACGATGCTCCGTCGGCGGCTCTCGCGTGCGC
AGCGTCCCTCTTAATTTAGCTATGTCATTGAGTGTTCGTGTTTGATTAGGTGTAGTGGCT
GTCTCGGTGGCTGATTTCAATATGTATCATCCTGATGTAATCGCGAACCAAGGGGAAGCC
GCTTGCTTCCTGCTTGACTGATGGATTATCAACTAAGCGTTTCTGAAAAAAAAAAAAAAA
AAAAA

Homology of Contig U35_13950 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None