- Probe CUST_38623_PI390587928
- Source Contig U35_178
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_38623_PI390587928 | Hv_44K_v2 | GGTTGTGTGGTTTGATTTGTACTACCATGATGTAAATTATGAGAATTCTATGGAGAAGCA | 899 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK253131.1 | 1012 | 2e-24 | 919 - 978 | 100 | 60 / 60 | plus | ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022 |
| MLOC | AK370975 | 1122 | 2e-24 | 890 - 949 | 100 | 60 / 60 | plus | ABC00006 ABC00189 ABC00194 ABC00347 ABC00422 ABC00425 ABC00432 ABC00433 ABC00617 ABC00628 ABC00828 ABC00837 ABC00841 ABC00926 ABC00949 ABC00951 ABC25177 ABC26749 ABC26767 ABC31752 ABC32758 ABC53022 |
| MLOC | MLOC_49099.1 | 311 | 2e-24 | 99 - 158 | 100 | 60 / 60 | plus | ABC00432 ABC00617 ABC26749 ABC53022 |
| JLOC1 | JLOC1_31455.1 | 303 | 8e-25 | 99 - 158 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC26749 | 353 | 3e-25 | 262 - 321 | 100 | 60 / 60 | plus | ABC26749 |
| Harvest21 | ABC00920 | 1581 | 3e-25 | 23 - 82 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC00437 | 1065 | 3e-25 | 925 - 984 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53022 | 934 | 1e-23 | 853 - 912 | 98 | 59 / 60 | plus | ABC53022 |
| Harvest21 | ABC00617 | 952 | 1e-23 | 866 - 925 | 98 | 59 / 60 | plus | ABC00617 |
| Harvest35 | U35_492 | 1057 | 3e-25 | 918 - 977 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_178 | 992 | 3e-25 | 900 - 959 | 100 | 60 / 60 | plus |
Contig Sequence (992 bp)
>U35_178 992 Hv_44K_v2 CAGCCATCTCCACAATCACACCTCACTTGGAGAACAAACACATACAGCAGACACCTTAGC ACTCCAATGGCGGCCACCACCATGTCCCTCTCCTCATCGACATTCGCCGGAAAGGCGGTG AAGAATGTCCCATTATCGGCTCTCTTCGGTGAGGCTCGCGTCACCATGCGCAAGACCGCG GCGAAAGCTAAGCAAGTTTCCTCCAGCAGCCCATGGTACGGAGCTGATCGTGTGCTCTAC CTCGGCCCACTCTCTGGCGAGCCCCCAAGCTACCTCACCGGTGAGTTCCCCGGTGACTAC GGGTGGGACACGGCTGGACTCTCTGCTGACCCCGAGACCTTCTCGAAGAACCGCGAGTTG GAGGTGATCCACTGCCGCTGGGCTATGCTTGGTGCACTGGGTTGCGTGTTCCCTGAGTTG CTTGCCCGCAATGGCGTGAAGTTCGGCGAGGCTGTCTGGTTCAAGGCCGGCTCGCAAATC TTCAGCGAGGGTGGCCTCGACTACCTCGGCAACCCAAGCCTCGTCCATGCTCAAAGCATC CTTGCCATTTGGGCTTGCCAGGTTGTGCTCATGGGCGCTGTTGAGGGGTACCGTGTTGCC GGCGGCCCACTCGGCGAGATCGTCGACCCTCTCTACCCGGGCGGAAGCTTTGACCCACTC GGTCTGGCCGATGACCCTGAAGCATTCGCCGAGCTCAAGGTGAAGGAGATCAAGAACGGC CGCCTTGCCATGTTCTCGATGTTTGGCTTCTTTGTCCAGGCCATAGTCACCGGCAAGGGC CCTCTTGAGAACCTCGCTGACCACATCGCCGACCCCGTCAACAACAACGCATGGGCATTT GCCACCAACTTCGTCCCCGGCAAATAAGGTGTCCTGGAGCTACTCATGTTGAAGTGTGAG GTTGTGTGGTTTGATTTGTACTACCATGATGTAAATTATGAGAATTCTATGGAGAAGCAT TGTTAGATTTGAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_178 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g52240.1 | 266 | 4e-171 | protein|chlorophyll A-B binding protein, putative, expressed |
| Brachypodium v1_2 | Bradi1g12130.1 | 267 | 0.0 | |
| Arabidopsis v10 | AT2G34420.1 | 265 | 4e-159 | | Symbols: LHB1B2, LHCB1.5 | photosystem II light harvesting complex gene B1B2 | chr2:14522716-14523513 REVERSE LENGTH=265 |