barSeed - Barley Seed Development Database

Probe CUST_37480_PI390587928

Source Contig U35_9814

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_37480_PI390587928	Hv_44K_v2	GTTGATTTGATGTGTCTTGAAATGGATGGTATTGGTATGAATGTCTTGCTGGATTTGAAT	877	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67011.1	1952	2e-24	1363 - 1422	100	60 / 60	plus	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
JLOC1	JLOC1_44207.1	1918	8e-25	1369 - 1428	100	60 / 60	plus
Harvest35	U35_9814	938	3e-25	878 - 937	100	60 / 60	plus

Contig Sequence (938 bp)

>U35_9814 938 Hv_44K_v2
CCTCGACGCCATCCTCTTCGATAGTGCGAGGAAATCGGTGCTGGATTGGTCGACACGGCT
GGGGATCATCAAGGGCGTGGCAAGGGGGCTGCTCTACCTGCATCAGGACTCAAGGCTGAC
GGTGATACACAGGGACCTCAAGGCCAGCAACGTGCTGCTGGACGCCGAGATGAGGCCCAA
GATCGCCGACTTCGGCATGGCCAAGATCTTCGGCGACAACCAGGTGAAAGCCAACAGCAA
GCGCGTCGTCGGCACATATGGCTACATTGCTCCCGAGTACTCGACGGAGGGCGTCTTCTC
CGTCAAATCCGACGTGTACAGCTTCGGCGTGCTGCTGCTGGAGATCGTTAGCGGCGTTAG
GATAAGCACAACCAGTGGCATCATGGAGTTTCCTAGCCTGATAGTCTATGCATGGCACCT
GTGGAGGGAAGGGAAGGCAGGCAAGCTGGTGGATCCGTCCATGGCAGAGAGCTGTCTACA
GGACGAGGCATTGCTCTGCATCCACGTCGGGCTCCTCTGCGTGGAGGACGACCCGAGCAG
GAGGCCGCTCATGTCGTCCGTCGTGTCCATCTTGGAGAACGGAAGCGCGTCGGTGGTGCT
GGCATCGGCGTCTCTTCCGGAGCCGAACAAGCCAGGGTACGTCGGAATGATGGAAGAGAA
GGCCCAGAGAAGCGATCTCGAGAATAGCGGGAACACCATTGCCATGACCGTTCTGCAAGG
CCGGTAGCACAGTAGGGACTGCAACTTTCTTCTTCAGAAGGAAAGGTGCACTTAGTTCTA
GCGTTTCATTTTCTTTTCTTTTTTACCGTGGGAAAAAACGGATTTGTAGAGCATTTTTTA
CTGGTACAAATGAAATATGTATTTACAGGAGCGCTGAGTTGATTTGATGTGTCTTGAAAT
GGATGGTATTGGTATGAATGTCTTGCTGGATTTGAATA

Homology of Contig U35_9814 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g37834.1	840	2e-110	protein\|serine/threonine-protein kinase receptor precursor, putative, expressed
Brachypodium v1_2	Bradi4g37220.1	845	7e-123
Arabidopsis v10	AT4G23150.1	659	2e-74	\| Symbols: CRK7 \| cysteine-rich RLK (RECEPTOR-like protein kinase) 7 \| chr4:12125731-12128301 FORWARD LENGTH=659