barSeed - Barley Seed Development Database

Probe CUST_35738_PI390587928

Source Contig U35_418

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35738_PI390587928	Hv_44K_v2	CCATCAAAGATGTTTACAATTGAGGGCCCATATGGAACATGAAATGTCTATATGAGAAAT	950	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69498.1	1386	2e-23	234 - 291	100	58 / 58	minus	ABC00006 ABC00189 ABC00194 ABC00418 ABC00422 ABC00425 ABC00433 ABC00628 ABC00828 ABC00837 ABC00841 ABC00944 ABC00951 ABC25177 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC53022
JLOC1	JLOC1_46050.1	1151	1e-23	169 - 226	100	58 / 58	minus
Harvest21	ABC00448	1050	3e-25	924 - 983	100	60 / 60	plus
Harvest21	ABC45656	306	4e-24	59 - 116	100	58 / 58	minus
Harvest35	U35_418	1107	3e-25	951 - 1010	100	60 / 60	plus

Contig Sequence (1107 bp)

>U35_418 1107 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGGACGCAGCCACCCATCAGTCGCAGCAGCAGCCGCACATC
AGCAGCTTGCTCTGTTCCATCCGGCAGCAAGCAATGGCGGCCACGACCATGGCGCTCTCC
TCCCCCGCGATGAAGCTCGCCGGAGCCTCGTACGTCCTCGGCGGCGGCCGCATCACCATG
CGCAAGACCGCGGCCAAGGCTGCCACCTCCAGCAGCCCGTGGTACGGCCCCGACCGCGTG
CTCTACCTCGGCCCGCTCTCCGGCGAGCCCCCGAGCTACCTCAGCGGCGAGTTCCCGGGC
GATTACGGCTGGGACACCGCGGGGCTCTCTGCTGACCCGGAGACCTTCGCCAAGAACCGT
GAGCTGGAGGTGATCCATTGCCGCTGGGCCATGCTCGGCGCGCTCGGCTGCGTCTTCCCC
GAGCTGCTCGCTCGCAACGGTGTCAAGTTCGGCGAGGCCGTCTGGTTCAAGGCCGGCTCC
CAGATCTTCAGCGAGGGTGGCCTCGACTACCTCGGCAATCCTAGCTTGGTCCACGCGCAG
AGCATCCTTGCCATCTGGGCTTGCCAGGTCGTGCTCATGGGCGCTGTCGAGGGGTACCGC
GTTGCTGGTGGCCCACTCGGAGAGATCGTCGACCCACTATACCCCGGTGGCAGCTTCGAC
CCCCTTGGCCTTGCAGACGACCCCGAGGCGTTTGCCGAGCTCAAGGTGAAGGAGATCAAG
AACGGTCGTCTTGCAATGTTTTCCATGTTTGGATACTTTGTGCAAGCCATCGTCACTGGT
AAGGGCCCGCTCGAGAACCTCGCTGACCACCTCGCCGACCCCGTCAACAACAACGCGTGG
GCCTTCGCCACCAACTTCGTGCCCGGCAAGTAAACACTTGAAAATCGAGTTCTCATGAGT
ATGTGTGTACTCTGGATGTATGACTAATATCGGATCGTTGATGTTGTACACCATCAAAGA
TGTTTACAATTGAGGGCCCATATGGAACATGAAATGTCTATATGAGAAATAAAAAAAAAA
AAATATGGTTTTCATTTTCCAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGACATTAATT
GTTCTTGTTGCTAAAAAAAAAAAAAAA

Homology of Contig U35_418 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g52240.1	266	3e-165	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi3g42620.1	261	7e-173
Arabidopsis v10	AT2G34430.1	266	8e-158	\| Symbols: LHB1B1, LHCB1.4 \| light-harvesting chlorophyll-protein complex II subunit B1 \| chr2:14524818-14525618 FORWARD LENGTH=266