barSeed - Barley Seed Development Database

Probe CUST_34584_PI390587928

Source Contig U35_28017

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34584_PI390587928	Hv_44K_v2	TCGAGTTCAGCAAGGTTGGGTTCATCTTCCGTGAGCACAACGCATCTCCTGGGTACCTCG	450	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249082.1	978	3e-22	439 - 494	100	56 / 56	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK249588.1	1172	3e-22	647 - 702	100	56 / 56	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC11072 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK248995.1	983	3e-22	438 - 493	100	56 / 56	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
MLOC	AK250591.1	1609	3e-22	1120 - 1175	100	56 / 56	plus	ABC00308 ABC00346 ABC00446 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK369652	2395	3e-22	1902 - 1957	100	56 / 56	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726 ABC52601
MLOC	AK360618	4810	3e-22	1608 - 1663	100	56 / 56	minus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC09523 ABC10724 ABC35392 ABC36259 ABC43245 ABC45683 ABC45928 ABC49726 ABC52601
MLOC	MLOC_64679.1	900	3e-22	368 - 423	100	56 / 56	plus	ABC00308 ABC00346 ABC00497 ABC00589 ABC00594 ABC00626 ABC00838 ABC00842 ABC00859 ABC00934 ABC00938 ABC00965 ABC00966 ABC00997 ABC01004 ABC35392 ABC36259 ABC45928 ABC49726
JLOC1	JLOC1_42494.1	1145	1e-22	486 - 541	100	56 / 56	plus
Harvest21	ABC00954	894	5e-23	401 - 456	100	56 / 56	minus
Harvest21	ABC00885	927	5e-23	337 - 392	100	56 / 56	plus
Harvest21	ABC00859	1211	5e-23	462 - 517	100	56 / 56	plus	ABC00859
Harvest21	ABC00626	741	5e-23	281 - 336	100	56 / 56	plus	ABC00626
Harvest21	ABC41092	497	2e-21	297 - 352	98	55 / 56	plus
Harvest21	ABC26846	263	2e-21	94 - 149	98	55 / 56	plus
Harvest21	ABC00814	924	2e-21	285 - 340	98	55 / 56	plus
Harvest21	ABC00441	534	2e-21	408 - 463	98	55 / 56	plus
Harvest21	ABC49549	131	8e-21	25 - 79	98	54 / 55	minus
Harvest21	ABC00965	505	8e-21	431 - 485	98	54 / 55	minus	ABC00965
Harvest35	U35_28017	510	3e-25	451 - 510	100	60 / 60	plus
Harvest35	U35_50753	858	5e-23	448 - 503	100	56 / 56	minus
Harvest35	U35_28146	656	5e-23	458 - 513	100	56 / 56	plus
Harvest35	U35_364	947	5e-23	337 - 392	100	56 / 56	plus
Harvest35	U35_349	1114	5e-23	340 - 395	100	56 / 56	plus
Harvest35	U35_248	772	5e-23	390 - 445	100	56 / 56	plus

Contig Sequence (510 bp)

>U35_28017 510 Hv_44K_v2
CCGAGGTAAGAAGTTCGAGACTTTGTCTTACTTGCCACCGCTCTCCACGGAGGCACTCCT
GAAGCAGGTCGACTACCTGATCCGCTCCAAGTGGGTGCCTTGTCTCGAGCTCAGCAAGGT
TGGGTTCATCTTCCGTGAGCACAATGCCTCTCCAGGGTATTACGATGGCCGATACTGGAC
AATGTGGAAGCTACCTATGTTTGGGTGCACCGACGCCACACAGGTGTTAAACGAAGTGGA
GGAGGTCAAGAAGGAGTACCTGCCCGGGCGGCCGCTCGAACGGTGCTAGCCTCGGCAGCG
TCAGCAACGGTGGAAGGATCAGGTGCATGCAGGTGTGGCCCATCGAGGGCATCAAGAAGT
TCGAGACCCTGTCTTACTTGCCACCACTCAGCACGGAGGCCCTCCTTAAGCAGGTCGACT
ACCTGATCCGCTCCAAGTGGGTGCCTTGCCTCGAGTTCAGCAAGGTTGGGTTCATCTTCC
GTGAGCACAACGCATCTCCTGGGTACCTCG

Homology of Contig U35_28017 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g08800.1	175	8e-53
Arabidopsis v10	None