barSeed - Barley Seed Development Database

Probe CUST_26084_PI390587928

Source Contig U35_48117

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_26084_PI390587928	Hv_44K_v2	CGCTTAATTACTTGTTTCTCTCAACCTCTGAATGTCAAATACAGAAGCTCTCTGAAAAAA	11	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67011.1	1952	7e-23	1456 - 1512	100	57 / 57	minus	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00951 ABC00981 ABC26749 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
MLOC	MLOC_67012.1	762	7e-23	79 - 135	100	57 / 57	minus	ABC00006 ABC00074 ABC00189 ABC00194 ABC00422 ABC00432 ABC00617 ABC00628 ABC00837 ABC00841 ABC00926 ABC00944 ABC00951 ABC00981 ABC26749 ABC26767 ABC26853 ABC31752 ABC32758 ABC49782 ABC53022
JLOC1	JLOC1_44207.1	1918	4e-23	1462 - 1518	100	57 / 57	minus
Harvest35	U35_48117	392	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (392 bp)

>U35_48117 392 Hv_44K_v2
TTTTTTTTTTTTTTTTTCAGAGAGCTTCTGTATTTGACATTCAGAGGTTGAGAGAAACAA
GTAATTAAGCGGAAGAAGAAAGATGCCTTGATTAATCTGAAAAATAACCAGATATTACAC
AAACACCATCTTTTTAGTGTACACACACCAACTCATCATCTCGACTCGCCCTCACATGCA
AAATCTATCAGTCCGGAAAGACATGCAGCACAGCAGCATCCATCAGCAATGAAGTTGTCG
GCCAAGCGCGCGCGCGCGCGCTAGAGGTTGAGCTGACTGAGCTCACTTGCCGGGAACGAA
GTTGGTGGCGAAAGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTT
CTCGAGGGGGCCCTTGCCGGTGACGATGGCCT

Homology of Contig U35_48117 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None