barSeed - Barley Seed Development Database

Probe CUST_2527_PI390587928

Source Contig U35_14288

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_2527_PI390587928	Hv_44K_v2	CTTTTTCGTTAGCCATGATTGCTTTCTTCGGATAGCTTTTAATATATATATTGTGCGTGC	1362	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_2874.2	1593	2e-24	1343 - 1402	100	60 / 60	plus	ABC05171 ABC05172 ABC05174 ABC06188 ABC12127 ABC12128 ABC16799 ABC19962 ABC30081 ABC33341 ABC34978 ABC38349 ABC44562 ABC44566 ABC49963
JLOC1	JLOC1_1718.1	1558	8e-25	1308 - 1367	100	60 / 60	plus
Harvest21	ABC12128	677	3e-25	343 - 402	100	60 / 60	minus	ABC12128
Harvest35	U35_14288	1764	3e-25	1363 - 1422	100	60 / 60	plus

Contig Sequence (1764 bp)

>U35_14288 1764 Hv_44K_v2
GAGAATTTGCACTAAGACTAGAGGGTAGGCTTGTTTTTATTGTAGATCTATAGTAGAGTA
TAACACTTAAATTTTCGAGTATGTGACTTGTATGCTTGTTGTATGTGCTTTCACTCGCAT
GTTATTAGAGCATATGCTTGTTCTGTATCATTGATCCATGGCATATAGTAATTCATATGG
TTCACACATAAAACTTGCAGCAGAAAATCATTCTAAATGTTTATCCTTTGTAAACACTTA
CCAAACTTCTTTGCTAGGATAGAAAAAAAGCCCATTGATAATCAGTAGTCATGGTGGACA
CCGGGAAGCAAATAAGCAACAAACTAATAGAAAAAATATATGATAATTTGCATGTGTGAC
TTCCCTTATCCCTTCCATCTAGGAAGTATCTGTTACTGTCAGCTTTGGAACAAGTATGGA
AGTATATATAAACACCTTTCACATGATTTTTCCATCAGAAGTAATATATGCTACTATACT
CATCCATACATGAACATGAATGTGAAACATACTAGTACATGTCTCGATCTGCACTCGCCC
TTACGAAATATGGATATATATTCTTTTTCCAGTGAAATTATTTATTATAAGTGGAGGATA
TTGCTATGCAGTATGAGTATATTTGTATTTCCATAATTAAAATATAGTGTATGTTCTTTT
TTTACACTAAAATATAGAGTACGTTCATCCGTAATATCAGTATATCCATTGAAAATGTGG
TATATTCATCCATGTAGTAGTATATACAGTAGTACTTGCAACCAAATAGTACAAATCTTT
CCTTTCAGGCTGATGGCCCAAGGCAGAAATATTAAATGGTGCATATATGTACTACCTTTT
GAGATTAGACTAGGAGTATATACTGCTTGCAAAACTAATTAACCACATTTACTTTTTTAT
TTCACTTATTTCTAGCTATATACTTCGTTTTGATAAGAGGTTACAAACTGCTCCTAGTAT
TTGTTTTGATGAGTATATACCATGTATTGTTTTATTTGCGGGTATATACCATTTACTGCT
TCTTTTGCAGGTATATACCATGTACTACTGAGGGTATATATTACTTTCCTATGAATGAGT
ATATGAAGTACATACCACGTCACGTGGGCGGACGTTTATACCTTTTTTTGTAGCACATAG
AGCATATACCTCAATTTTGCAAAAGGCACTCAGAAGTAAAAGTTGTATCTTCATTCAGAA
CGAGAGTATGCTCAACTGAGGAGTACATTCTATATATTGCTTGAACCATGTATAGTACTG
TAAAACAATCAGACAAATAGTATTCGATTGTCATCACACCTCTTTACAAACAAGCAAGGC
AATCTATACATGTTTTGAGTTAATAAAATACAGATCCATATACTTTTTCGTTAGCCATGA
TTGCTTTCTTCGGATAGCTTTTAATATATATATTGTGCGTGCAATTTTACTAGTTTCTTT
GGTCTGAAAGCCTTACCATCATTTTCTTCTTATAGACGGCAATGGCAAGAGCATATTGTG
CGGAGAAAGAGGATGAGAAGAAACTTGTGGTTCTCATCCCATCTTTGTGGAACTCTCTTT
TTGTGCGATTGTGCACTTGTTGGGTCCTTTTTCTGTGCACTTGCACTTGTAGAAGTATTC
TGTTGTGCACATGTAAAATTATGTTGATGTGCCCTTGTTAGGCGTTGAACCTTAATGCGT
GGAGTCGGTGGATGATGTAATGTATTTGATCTGATATGCTACTGAAATGAAATATATATT
CTATTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None