barSeed - Barley Seed Development Database

Probe ABC53003

Source Contig ABC53003

barSeed

Links

Affymetrix Source Sequence (2806 bp)

>ABC53003 2806
GAATTCACAAATTTGGCGTACATTTTGAAGATTATATAGCTATCATAATTTCTAGAGTTG
CATAAAATGCGAAGAGACACTGTCCCAAAGAGACCATGCGAAACTCAACATAGATGCATC
GTTTGATCCTTGACTCATATCAGGGTGTTTTTGGAGCGGTGATAAAGGGTAACAATGTAA
AATTCTTTGCAGATACACATGGGAAGGTTGATTCCAGTTATAATGCTTTTATAGTAGANC
CCCTATCCTGAAGGTTTGGTCTAAATCTTGCACATATGAGCGGATGCAATAAATTTGAGA
TCAATGAGGATAATATAGAAGTGATCACTACCATCAAAGAGGGGAGCTTGTCGTTCATTG
CAAGTGCTATTTTTGATGACTGATATTTTTACGCCCTTAGACTTTAACTCATATAATTTA
ATGAACCCCGTTATATGGAAACCAACCATCTTTGTACATGAATTGGCTAGACTGGATATA
TATTCCCGTCCTAATCTTTTCTTACAGTCTACCCTTGAGGAAATTGTCCCCATGGTTGTA
AAAATGCGATGATTCTTATGAATGAATAAAGGAGATTGAAGTTTTAAAAAACATCCTACA
TCCAACACGGATAATATATTAATTTTAGTGTGACCAACACTAATTTTAATAAAAGCTTAC
AAACTTAATCCCACTCAAGCTATGCCTATCTGGATATGACTACATAAAGTAGAGCATCAC
AAACTAAATTCCAAAAAGAGGCAAAATCTGGATTAATGTGTGTAGTGTAAAGTGAAAAAA
TGAGTCATCATTCATTATCAAGCATGCCTTACAACGAGACGATACGTGCAACAAAAAGCA
ACTATGATGAGCAATCCAAAATCACACAAGTAAAGTAGTACTACCAAATACAACATACCA
AACGATTAGTTGGATAATCTTAGGAGTACTTTTTCAAAAAGAAAGGGCAAGGATGAAATT
ATACCATACCATGACAGCTATAAATAAACATGCACCATCATGGTTGCCCTCCATCATCCA
AACTGCACACACCAAGATCAGAAACATCAATTCCAAGAAAGCAATAGTAACCACAAATCC
AACATGAAGACCTTCCTCACCTTTGTCCTCCTTGCCATGGTGATGAGCATCGTCACTACC
GCTAGGCAACTAAACCCTAGCAGCCAAGAGTTGCAATCACCACAACAATCATATCTGCAG
CAGCCATATCCACAAAACCCATATCTACCGCAACAACCATTTCCAGTGCAGCAACCGTTT
CACACACCCCAACAATATTTCCCCTATCTACCAGAGGAATTGTCTCCCCAATATCAAATA
CCAACCCCCCTACAACCACAACAACCATTCCCCCAACAACCACAACAACCTCTTCCTCGG
CCCCAACAACCATTCCCCTGGCAACCACAACAACCATTTCCCCAGCCCCAACAACCAATT
CCCTACCAACCACAACAACCATTCAACCAGCAACCACAACAAATAATATCCCAGCAACCA
CAACAACCATTCCCCCAACAACCACAACAACCTTTTCCTCAGCCCCAACAACCATTCCCC
TGGCAACCACAACAACCATTTCCCCAGCCTCAACAACCATTTCCCCTGCAACCACAACAA
CCATTCCCCTGGCAACCACAACAACCATTTCCGCAGCCCCAACAACCTATTGCGCACCAA
CCACAACAACCATTCTCGTTCTCGCAGCAACCACAACAACCATTCCCTCTGCAACCGCAA
CAACCATTCCCCCAACAACCACAACAACCATTTCCCCAACAACCACAACAAATAATTTTC
CAGCAACCCCAACAATCATACCCTGTGCAACCTCAACAGCCATTTCCTCAACCCCAACCA
GTCCCCCAGCAACGACCCCAACAAGCATCCCCCCTACAACCGCAACAACCATTTCCCCAG
GGATCAGAACAAATAATTCCCCAGCAACCTCAACAACCATTCCCTCTGCAGCCACACCAA
CCATATACACAACAAACCATCTGGAGTATGGTCTAGTCATCAGGGGCCTATGAAGCGACA
AGTTGTAATACTAAATGGGTGGATCATCATCCTTTAGTCAACGGAGTGTTTAATGTAATG
ATGATAAATAAAGTGATGTGCACCATCATGTGTAACCCCGACCTATACTAGTTCAAATGA
GAATAAAAGACAAAGAAAGTTCTTGTCACAAGGACAGTGCTGGTAATTATTAAATTNGTG
CCATATTTAGATTTTCAACCCTAACTACANTTTGAGTGATATCCATTATCTGCCTATTTA
TGATGTGAAGTCCTATGAGCCTAACATAATTAACGGTTGATAGCTTGGTTTGAATTGAAT
TATTAGCAAATAAGGAGTAATTAATAATTGCAAATTATCCCTTCGATGTCTAGCCATATG
AATTGTGTGACCTTATCGTTTGTAATGATTCTAGATTGTACATATACATTTTCCTAATTG
TTGAGTGACATATGAAGCAACATATGGTGACCGACCACTGGTCTCGGGTGTAAATCTCAG
TAGCACCTTTATATCGAGGGGAGTGAGATGATGATGACTTCGTGTGGAATTTTGTAGTTA
TTTAAATAGTTTCTAAAATGGACCGGTTGCTCATATTAGAAAATATGGGCTTGCGCCATA
TCGAGTTTTTGGAAATGGACAAGATGAAGGGATGATTGAATTTATGCCTTCTATTTCTCT
TGCACATGAAACTTGAGATTGAATATGGTGGCATTACAAGTTACTTACAGAAGTTCCATA
GACTAATTATGTCCACCTAGTATAGCTACCCAATGGTCGGAAGCTT

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
MLOC_460.1	1434	0.0	1 - 567	99	561 / 569	CUST_36173_PI390587928 CUST_32376_PI390587928 CUST_37672_PI390587928 CUST_3877_PI390587928 CUST_3899_PI390587928 CUST_13614_PI390587928 CUST_13659_PI390587928	ABC28925 ABC49398 ABC53003
MLOC_46440.1	875	0.0	240 - 875	99	633 / 636	None	ABC00270 ABC49398 ABC53003
MLOC_33725.1	1615	4e-166	677 - 1063	94	364 / 387	None	ABC53003
MLOC_71443.1	725	0.0	1 - 724	86	623 / 728	None	ABC00270 ABC49398 ABC53003
MLOC_23648.1	578	0.0	1 - 528	91	490 / 538	CUST_37672_PI390587928 CUST_3877_PI390587928 CUST_3899_PI390587928 CUST_13614_PI390587928	ABC28925 ABC49398 ABC53003
MLOC_81695.1	1201	0.0	1 - 1085	79	882 / 1115	CUST_13652_PI390587928 CUST_40731_PI390587928	ABC28925 ABC44080 ABC49398 ABC53003
MLOC_20043.1	597	0.0	1 - 597	88	526 / 601	None	ABC00270 ABC49398 ABC53003
MLOC_29227.1	492	0.0	1 - 491	90	457 / 508	None	ABC00270 ABC53003
MLOC_23452.1	436	1e-166	1 - 436	92	400 / 436	None	ABC00270 ABC49398 ABC53003
MLOC_22933.1	742	3e-163	6 - 719	82	594 / 727	CUST_3602_PI390587928	ABC28925 ABC44080 ABC49398 ABC53003
MLOC_1612.1	431	3e-153	1 - 361	94	345 / 368	None	ABC53003
MLOC_32170.1	243	6e-105	1 - 238	96	228 / 238	None	ABC00270 ABC53003
MLOC_21855.1	983	3e-103	270 - 983	77	562 / 730	CUST_3604_PI390587928	ABC00245 ABC49398 ABC53003
MLOC_66895.1	200	2e-95	1 - 200	99	197 / 200	None	ABC53003
MLOC_50555.1	505	8e-79	1 - 502	78	414 / 530	None	ABC53003
MLOC_35641.1	144	2e-64	1 - 144	98	141 / 144	None	ABC53003
MLOC_2271.1	246	3e-58	1 - 246	84	219 / 261	None	ABC49398 ABC53003