barSeed - Barley Seed Development Database

Probe CUST_13652_PI390587928

Source Contig U35_311

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13652_PI390587928	Hv_44K_v2	CCTATACTAGTTCAAGCATGAGAAAAAGGACAAAGAAAGTTCTTGTCACAAGGACAAAAA	816	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.036	0.023	0.459	1.871	2.385	2.865
Raw	4.952	2.490	122.360	697.922	334.980	438.164

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81695.1	1201	7e-23	189 - 245	100	57 / 57	minus	ABC28925 ABC44080 ABC49398 ABC53003
JLOC1	JLOC1_54342.3	598	4e-23	24 - 80	100	57 / 57	minus
JLOC1	JLOC1_54342.2	956	4e-23	76 - 132	100	57 / 57	minus
JLOC1	JLOC1_54342.1	997	4e-23	76 - 132	100	57 / 57	minus
Harvest21	ABC00221	870	3e-25	799 - 858	100	60 / 60	plus
Harvest35	U35_311	888	3e-25	817 - 876	100	60 / 60	plus

Contig Sequence (888 bp)

>U35_311 888 Hv_44K_v2
ACCTTTCCCCCGGCAACCACAACAAATAGTACCCCAGCAACCACAACAACCATTCCCTCA
GCAACCACAACAACCTTTTCCTCAGCCCCAACAACCATTCTCTTGGCAACCACAACAACC
ATTTCTCCAGCCCCTACAACTATAGCCCCTGCAAGCACAACAACCATTCCCCTTGCAACC
TCAACTACCATTTCCGCAACCCCAACAACCAATTGGACAGCAACCAAAACAACCACTCCT
GCAGCAACCACAACAAACAATTCCCCAGCAACCACAACAACCATTCCCCCTGCAGCCGCA
ACAACCATTCCCCCAACAACCACAACAACCACTTCCCCAACAACCCCAACAAATAATTTC
CCAGCAACCCCAACAACCATTCCCTCTACAACCTCAACAACCATTTCCCCAACCCCAACC
ATTCCCCCAGGAGCAACCCCAACAAGCATTCCCCCTACAACCGCAACAACCATTCCCCGA
GGAATCAGAACAAATAATTACCCAACAACCATTCCCTCTACAACCACAACAACTGTTCCC
CCAGCAACCACAACAACCACTTCCCCAGCCCCAACAACCATTCCGCCAACTACCAAAATA
TATAATTCCCCAGCAACCTCAACAACCATTCCTTCTGCAACCACACCAACCTCAGCAACC
TTATGCACAACAAGACATCTGGAGTGATATAGCCCTCTTGGGCTAATGAAGCGAAAAGTT
GTAATACTAGATGGGTGTATCATCGTTGTTTAGTCAATGAGTGTTCAGTGTAATGATCAT
AAATAAAGTGATGTGCACCATCATGTGTAATCCCGACCTATACTAGTTCAAGCATGAGAA
AAAGGACAAAGAAAGTTCTTGTCACAAGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None