barSeed - Barley Seed Development Database

Probe CUST_13614_PI390587928

Source Contig U35_340

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_13614_PI390587928	Hv_44K_v2	GGCCTATATAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTCACAAGGACAGTGC	1333	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.162	0.094	0.393	2.228	6.157	10.168
Raw	6.008	2.903	25.352	202.771	213.270	390.055

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_460.1	1434	7e-23	1167 - 1227	98	60 / 61	minus	ABC28925 ABC49398 ABC53003
MLOC	MLOC_23648.1	578	9e-22	192 - 250	98	58 / 59	minus	ABC28925 ABC49398 ABC53003
JLOC1	JLOC1_278.1	654	4e-23	387 - 447	98	60 / 61	minus
JLOC1	JLOC1_16325.1	134	5e-22	14 - 72	98	58 / 59	minus
Harvest21	ABC53016	1420	3e-25	1335 - 1394	100	60 / 60	plus
Harvest21	ABC00806	947	1e-23	857 - 917	98	60 / 61	plus
Harvest21	ABC53003	2806	2e-22	2142 - 2200	98	58 / 59	plus	ABC53003
Harvest21	ABC00265	641	8e-21	270 - 328	97	57 / 59	plus
Harvest35	U35_340	1406	3e-25	1334 - 1393	100	60 / 60	plus
Harvest35	U35_50693	2806	2e-22	2142 - 2200	98	58 / 59	plus

Contig Sequence (1406 bp)

>U35_340 1406 Hv_44K_v2
AAGCTTACAAACTTAATCCCACTCAAGCTATGCCTATCTCGATATGACTACATAAAGTAG
AGCATCACAAACTAAATTCCAAAAAGAGGCAAAATCTGGATTAATGTGTGTAGTGTAAAG
TGAAAAAATGAGTCATCATTCATTATCAAGCATGCCTTACAACGAGACGATATGTGCAAC
AAAAAGCAACTATGATGAGCAATCCAAAATCACACAAGTAAAGTAGTACTACCAAATACA
ACATACCAAACGATTAGTTGAATAATCTTAGGAGTACTTTTTCAAAAAGAAAGGGCAAGG
ATGAAATTATACCATACCATGACAGCTATAAATAAACATGCACCATCATGGTTGCCCTCC
ATCATCCAAACTGCACACACCAAGATCAGAAACATCAATTCCAAGAAAGCAATAGTAACC
ACAAATCCAACATGAAGACCTTCCTCACCTTTGTCCTCCTTGCCATGGTGATGAGCATCG
TCACTACCGCTAGGCAACTAAACCCTAGCAGCCAAGAGTTGCAATCACCACAACAATCAT
ATCTGCAGCAGCCATATCCACAAAACCCATATCTACCGCAAAAACCATTTCCAGTGCAGC
AACCGTTTCACACACCCCAACAATATTTCCCCTATCTACCAGAGGAATTGTTTCCCCAAT
ATCAAATACCAACCCCCCTACAACCACAACAACCATTCCCCCAACAACCACAACAACCTC
TTCCTCGGCCCCAACAACCATTCCCCTGGCAACCACAACAACCATTTCCCCAGCCCCAAG
AACCAATTCCCCAGCAACCACAACAACCATTCCCACCGCAACCACAACAACCATTCCCCC
AGCAACCACAACAACATTTTTCCAACAACCCCAACAACCATTCCCTGTGCAACCTCAACA
GCCATTTCCTCAACCTCAACCAGTCCCCCAGCAGCGACCCCAACAAGCATCCCCCCTACA
ACCGCAACCCCAACAAGCATCCCCCCTACAACCGCAACAACCATTTCCCCAGGGATCAGA
ACAAATAATTCCCCAACAACCATTCCCTCTGCAACCACAACCATTCCCCCAACAACCACA
ACAACCATTGCCCCAGCCCCAACAACCATTCCGCCAACAAGCAGAACTAATAATTCCCCA
GCAACCTCAACAACCATTGCCTCTGCAGCCACACCAACCATATACACAACAAACCATCTG
GAGTATGGTCTAGTCATCAGGGGCCTATGAAGCGACAGTTGTAATACTAAATGGGTGGAT
CATCATCCTTTAGTCAACGGAGTGTTTAATGTAATGATATAATAAAGTGATGTGCACCAT
CATGTGTAACCCCGGCCTATATAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTC
ACAAGGACAGTGCTGGTAATTATTAA

Homology of Contig U35_340 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None