- Probe CUST_13659_PI390587928
- Source Contig U35_307
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_13659_PI390587928 | Hv_44K_v2 | TATACACAACAAACCCTCTGGAGTATGGTCTAGTCATCAGGGGCCTATGAAGCGACAAGT | 709 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.044 | 0.024 | 0.263 | 2.002 | 4.879 | 5.945 |
| Raw | 96.261 | 74.894 | 738.917 | 7690.317 | 7297.623 | 9654.960 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_460.1 | 1434 | 7e-23 | 1324 - 1383 | 98 | 59 / 60 | minus | ABC28925 ABC49398 ABC53003 |
| JLOC1 | JLOC1_278.1 | 654 | 4e-23 | 544 - 603 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC28949 | 516 | 3e-25 | 457 - 516 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28925 | 296 | 3e-25 | 74 - 133 | 100 | 60 / 60 | plus | ABC28925 |
| Harvest21 | ABC53003 | 2806 | 1e-23 | 1984 - 2043 | 98 | 59 / 60 | plus | ABC53003 |
| Harvest21 | ABC49397 | 255 | 1e-23 | 175 - 234 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32971 | 350 | 1e-23 | 270 - 329 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32562 | 363 | 1e-23 | 146 - 205 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00806 | 947 | 1e-23 | 701 - 760 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00303 | 819 | 1e-23 | 568 - 627 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00298 | 697 | 1e-23 | 543 - 602 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00293 | 494 | 1e-23 | 272 - 331 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00290 | 854 | 1e-23 | 634 - 693 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00265 | 641 | 1e-23 | 112 - 171 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00260 | 344 | 1e-23 | 124 - 183 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00242 | 917 | 1e-23 | 688 - 747 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00023 | 831 | 1e-23 | 607 - 666 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC53016 | 1420 | 6e-22 | 1182 - 1238 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC52719 | 640 | 6e-22 | 579 - 638 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_307 | 769 | 3e-25 | 710 - 769 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50693 | 2806 | 1e-23 | 1984 - 2043 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_47884 | 255 | 1e-23 | 175 - 234 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37238 | 350 | 1e-23 | 270 - 329 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_113 | 494 | 1e-23 | 272 - 331 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_107 | 1122 | 1e-23 | 865 - 924 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_80 | 1022 | 1e-23 | 802 - 861 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_50527 | 640 | 6e-22 | 579 - 638 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_340 | 1406 | 6e-22 | 1181 - 1237 | 98 | 56 / 57 | plus |
Contig Sequence (769 bp)
>U35_307 769 Hv_44K_v2 TTTCCCGTATCTACCACAGCAAACATTTCCCCAATCCCAACAACCAACCCCCCTACAACC ACAACAACCATTCCCCCTGCAACCCCAACCACCACAACAACCTTTTCCTCAGTCCCAACA ACCATTCACCTAACAACCACAACAACCTTTTTCCCAGCCCCAACAACCAATTCCCCAGCA ACCACAACAACCGTTCCCCCAGCAACCACAACAAATAATTCCCCAACAATCATTCCCCTG GCAACCACAACAACCATTTTCCCGGCCCCACCAACCAATTCGCCAGGAACCACAACAACC ATTCCCCCAGCAACCACAACAAATAGTACCCCAGCAACCACAACAACCATTCCCCCAGCA ACCACAACAACCTTTTCCTCAGCCCCAACAACCATTCCCTTGGCAACCACAACAACCATT TCTCCAGCCCCTACAACTATTTCCCTAGCAAGCACAACAACCATTACCCTTGCAACCACA ACTACCATTTCCGCAGCCCCAACAACCAATTGGACAGCAACCACAACAACCATTCCTGCG GCAACCACAACAAATAATTCCCCAACAACCATTCCCTCTGCAACCACAACCATTCCCCCA ACAACCACAACAACCATTTCCCCATCCCCAACAACCATTCCGCCAACAAGTAGAACTAAT AATTCCCCAGCAACCTCAACAACCATTCCCTCTGCAGCCACACCAACCATATACACAACA AACCCTCTGGAGTATGGTCTAGTCATCAGGGGCCTATGAAGCGACAAGT
Homology of Contig U35_307 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |