barSeed - Barley Seed Development Database

Probe CUST_40731_PI390587928

Source Contig U35_50650

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_40731_PI390587928	Hv_44K_v2	GAATCAGAACAAATAATTACCCAACAACCATTCCCTCTACAACCACAACAACCGTTCACT	311	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.054	0.029	0.345	1.842	3.697	4.680
Raw	7.441	2.929	72.249	542.631	412.019	576.771

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81695.1	1201	3e-21	524 - 580	98	56 / 57	minus	ABC28925 ABC44080 ABC49398 ABC53003
Harvest21	ABC52927	372	3e-25	312 - 371	100	60 / 60	plus
Harvest21	ABC00750	748	1e-23	445 - 501	100	57 / 57	plus
Harvest21	ABC49398	2065	6e-22	1248 - 1304	98	56 / 57	plus	ABC49398
Harvest21	ABC00773	891	6e-22	483 - 539	98	56 / 57	plus
Harvest21	ABC00221	870	6e-22	464 - 520	98	56 / 57	plus
Harvest35	U35_50650	372	3e-25	312 - 371	100	60 / 60	plus
Harvest35	U35_299	853	1e-23	445 - 501	100	57 / 57	plus
Harvest35	U35_47885	2065	6e-22	1248 - 1304	98	56 / 57	plus
Harvest35	U35_311	888	6e-22	482 - 538	98	56 / 57	plus

Contig Sequence (372 bp)

>U35_50650 372 Hv_44K_v2
CGAAGATCGTTGGCCGGCTCGGGCTCGAGAAGACCATGTTCGAGACATCCAATGCCAACA
CCTCCGAGTGGTTCGTCAAACGATACGGCCCACGGGTGAACCTCTTCGCCGACCACTCCG
AGGTGATGAACCTGGAGCGCCTCCGCGGCTTGGACGTGCGCCGGAGGGTCCGCCCCTTGC
TCCCTTCGCCGTTCTTCCTGATGTGATGACGGCCTTGCTGAGTAATGATATGGGACTGGG
GCCTAAGCGAAGTGTTGATGGAGCAACCCCAACAAGCATTCCCCCTACAACCGCAACAAC
CATTCCCCGAGGAATCAGAACAAATAATTACCCAACAACCATTCCCTCTACAACCACAAC
AACCGTTCACTC

Homology of Contig U35_50650 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None