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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3602_PI390587928Hv_44K_v2GTAATCCCGACCTATACTAGTTCAAGCATGAGAATGAAAGACAAAGAAAGTTCTTGTCAC793GeneList: black
MasterList: Hordein_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.0220.0100.4041.8392.3412.754
Raw 29.64112.937928.1636091.0432848.2103629.633



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_22933.17422e-24229 - 28810060 / 60minus ABC28925 ABC44080 ABC49398 ABC53003
JLOC1JLOC1_15870.15988e-2585 - 14410060 / 60minus
Harvest21ABC007738913e-25832 - 89110060 / 60plus
Harvest21ABC0022712634e-241188 - 124510058 / 58plus
Harvest35U35_2998533e-25794 - 85310060 / 60plus
Harvest35U35_7412634e-241188 - 124510058 / 58plus



Contig Sequence (853 bp)

>U35_299 853 Hv_44K_v2
CAACCACTTCCGCAACAACCCATCCCACAAAAACCACAACCATACCCACAACAACCCTTC
CCACCGCAACAACCATTTCCACAACAACCCGTCCCACAACAACCACAACCATACCCACAA
CAACCACAACAACCCTTGCAACCACAACTACCATTTCCGCAACCCCAACAACCAATTGGA
CAGCAACCAAAACAACCACTCCTGCAGCAACCACAACAAACAATTCCCCAGCAACCACAA
CAACCATTCCCCCTGCAGCCGCAACAACCATTCCCCCAACAACCACAACAACCACTTCCC
CAACAACCCCAACAAATAATTTCCCAGCAACCCCAACAACCATTCCCTCTACAACCTCAA
CAACCATTTCCCCAACCCCAACCATTCCCCCAGGAGCAACCCCAACAAGCATTCCCCCTA
CAACCGCAACAACCATTCCCCGAGGAATCAGAACAAATAATTACCCAACAACCATTCCCT
CTACAACCACAACAACCGTTCCCTCTGCAACCACAACAACTGTTCCCCCAGCAACCACAA
CAACCACTTCCCCAGCCCCAACAACCATTCCGCCAACTACCAAAATATATAATTCCCCAG
CAACCTCAACAACCATTCCTTCTGCAACCACACCAACCTCAGCAACCTTATGCACAACAA
GACATCTGGAGTGATATAGCCCTCTTGGGCTAATGAAGCGAAAAGTTGTAATACTAGATG
GGTGTATCATCGTTTTTTAGTCAATGAGTGTTCAATGTAATGATGATAAATAAAGTGATG
TGCACCATCATGTGTAATCCCGACCTATACTAGTTCAAGCATGAGAATGAAAGACAAAGA
AAGTTCTTGTCAC



Homology of Contig U35_299 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None