- Probe CUST_3899_PI390587928
- Source Contig U35_107
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3899_PI390587928 | Hv_44K_v2 | ATGTGTAACCCCGGCCTATACTAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTC | 1008 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.056 | 0.025 | 0.238 | 2.003 | 4.555 | 6.520 |
| Raw | 230.315 | 152.069 | 1290.617 | 15084.167 | 12927.770 | 20168.033 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_460.1 | 1434 | 2e-24 | 1180 - 1239 | 100 | 60 / 60 | minus | ABC28925 ABC49398 ABC53003 |
| MLOC | MLOC_23648.1 | 578 | 7e-23 | 205 - 264 | 98 | 59 / 60 | minus | ABC28925 ABC49398 ABC53003 |
| JLOC1 | JLOC1_278.1 | 654 | 8e-25 | 400 - 459 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_16325.1 | 134 | 4e-23 | 27 - 86 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC32562 | 363 | 3e-25 | 290 - 349 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00806 | 947 | 3e-25 | 845 - 904 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00303 | 819 | 3e-25 | 712 - 771 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00293 | 494 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00290 | 854 | 3e-25 | 778 - 837 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00260 | 344 | 3e-25 | 268 - 327 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53003 | 2806 | 1e-23 | 2128 - 2187 | 98 | 59 / 60 | plus | ABC53003 |
| Harvest21 | ABC28925 | 296 | 1e-23 | 218 - 277 | 98 | 59 / 60 | plus | ABC28925 |
| Harvest21 | ABC00242 | 917 | 1e-23 | 832 - 891 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00023 | 831 | 1e-23 | 751 - 810 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC53016 | 1420 | 5e-23 | 1323 - 1381 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC44047 | 359 | 6e-22 | 18 - 77 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC00265 | 641 | 6e-22 | 256 - 315 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_113 | 494 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_107 | 1122 | 3e-25 | 1009 - 1068 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_80 | 1022 | 3e-25 | 946 - 1005 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50693 | 2806 | 1e-23 | 2128 - 2187 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_340 | 1406 | 5e-23 | 1322 - 1380 | 98 | 59 / 60 | plus |
Contig Sequence (1122 bp)
>U35_107 1122 Hv_44K_v2 CAACCATTCCCCTGGCAACCACAACAACCATTTCCCCAGCCCCAAGAACCAATTCCGTAG CAACCACAACAACCATTCCCCGAGAAACCACATTAAATAATTCCCGAGCAACCACAACAA CCATTCCCCCAGCAACCACAACAACCTTTTCCTCGGCCCCAACAACCATTCCCCTCGCAA CCACAACAACCATTTCCCCAGCCCCAACAACCAATTCCCTACCAACCACAACAACCATTC AACCAGCAACCACAACAAATAATACCCCAGCAACCACAACAACCATTCCCCCAGCAACCA CAACAACCTTTTCCTCAGCCCCAACAACCATTCCCCTGGCAACCACAACAACCATTTCCC CAGCCTCAACAACCATTTCCCCTGCAACCACAACAACCATTCCCCTGGCAACCACAACAA CCATTTCCGCAGCCCCAACAACCAATTGCGCACCAACCACAACAACCATTCTCGTTCTCG CAGCAACCACAACAACCATTCCCTCTGCAACCGCAACAACCATTCCCCCAACAACCACAA CAACCATTTCCCCAACAACCACAACAAATAATTTTCCAGCAACCCCAACAATCATACCCT GTGCAACCTCAACAGCCATTTCCTCAACCTCAACCAGTCCCCCAGCAGCGACCCCAACAA GCATCCCCCCTACAACCGCAACAACCATTTCCCCAGGGATCAGAACAAATAATTCCCCAA CAACCATTCCCTCTGCAACCACAACCATTCCCCCAACAACCACAACAACCATTTCCCCAG CCCCAACAACCATTCCGCCAACAAGCAGAACTAATAATTCCCCAGCAACCTCAACAACCA TTCCCTCTGCAGCCACACCAACCATATACACAACAAACCATCTGGAGTATGGTCTAGTCA TCAGGGGCCTATGAAGCGACAAGTTGTAATACTAAATGGGTGGATCATCATCCTTTAGTC AACGGAGTGTTTAATGTAATGATGATAAATAAAGTGATGTGCACCATCATGTGTAACCCC GGCCTATACTAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTCAAAAAAAAAAAA AAAAAAAAAAATGCTGGTAATTATTAAAAAAAAAAAAAAAAA
Homology of Contig U35_107 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |