- Probe CUST_37672_PI390587928
- Source Contig U35_80
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_37672_PI390587928 | Hv_44K_v2 | GTAACCCCGGCCTATACTAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTCAAAA | 949 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.079 | 0.025 | 0.251 | 1.994 | 4.542 | 6.303 |
| Raw | 269.527 | 122.241 | 1103.270 | 12319.497 | 10425.180 | 15811.633 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_460.1 | 1434 | 7e-23 | 1179 - 1235 | 100 | 57 / 57 | minus | ABC28925 ABC49398 ABC53003 |
| MLOC | MLOC_23648.1 | 578 | 3e-21 | 204 - 260 | 98 | 56 / 57 | minus | ABC28925 ABC49398 ABC53003 |
| JLOC1 | JLOC1_278.1 | 654 | 4e-23 | 399 - 455 | 100 | 57 / 57 | minus | |
| JLOC1 | JLOC1_16325.1 | 134 | 2e-21 | 26 - 82 | 98 | 56 / 57 | minus | |
| Harvest21 | ABC32562 | 363 | 3e-25 | 294 - 353 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00290 | 854 | 3e-25 | 782 - 841 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00260 | 344 | 3e-25 | 272 - 331 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00806 | 947 | 1e-23 | 849 - 905 | 100 | 57 / 57 | plus | |
| Harvest21 | ABC00303 | 819 | 1e-23 | 716 - 776 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC00293 | 494 | 1e-23 | 420 - 480 | 98 | 60 / 61 | plus | |
| Harvest21 | ABC00242 | 917 | 1e-23 | 836 - 895 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC53003 | 2806 | 6e-22 | 2132 - 2188 | 98 | 56 / 57 | plus | ABC53003 |
| Harvest21 | ABC44047 | 359 | 6e-22 | 14 - 73 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC00023 | 831 | 6e-22 | 755 - 815 | 97 | 59 / 61 | plus | |
| Harvest21 | ABC53016 | 1420 | 2e-21 | 1327 - 1382 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC28925 | 296 | 2e-21 | 222 - 277 | 98 | 55 / 56 | plus | ABC28925 |
| Harvest35 | U35_107 | 1122 | 3e-25 | 1013 - 1072 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_80 | 1022 | 3e-25 | 950 - 1009 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_113 | 494 | 1e-23 | 420 - 480 | 98 | 60 / 61 | plus | |
| Harvest35 | U35_50693 | 2806 | 6e-22 | 2132 - 2188 | 98 | 56 / 57 | plus | |
| Harvest35 | U35_340 | 1406 | 2e-21 | 1326 - 1381 | 98 | 56 / 57 | plus |
Contig Sequence (1022 bp)
>U35_80 1022 Hv_44K_v2 TTTCCAGTGCAGCAACCGTTTCCCACACCCCAACAATATTTCCCCTATCTACCAGAGGAA TTGTTNCCCCAATATCAAATACCAACCCCCCTACAACCACAACAACCATTCCCCCAACAA CCACAACAACCTCTTCCTCGGCCCCAACAACCATTCCCCTGGCAACCACAACAACCATTT CCCCAGCCCCAAGAACCAATTCCCCTGCAACCACAACAACCATTCCCCTGGCAACCACAA CAACCATTTCCGCAGCCCCAACAACCAATTGCGCACCAACCACAACAACCATTCTCGTTC TCGCAGCAACCACAACAACCATTCCCTCTGCAACCGCAACAACCATTCCCCCAACAACCA CAACAACCATTTCCCCAACAACCACAACAAATAATTTTCCAGCAACCCCAACAATCATAC CCTGTGCAACCTCAACAGCCATTTCCTCAACCCCAACCAGTCCCCCAGCAGCGACCCCAA CAAGCACCCCCCCTACAACCGCAACAACCATTTCCCCAGGGATCAGAACAAATAATTCCC CAACAACCATTCCCTCTGCAATCACAACCATTCCCCCAACAACCACAACAACCATTTCCC CAGCCCCAACAACCATTCCGCCAACAAGCAGAACTAATAATTCCCCAGCAACCTCAACAA CCATTCCCTCTGCAGCCTCCCCTGGCAATACACAACAAACCATTTCCGCAGCCCCAACAA CCAATTGCGCACCAACCACAACAACCATTCTCGTTCTCGCAGCAACCACAACAACCATTC CCTCTGCAACCGCAACAACCATATACACAACAAACCATCTGGAGTATGGTCTAGTCATCA GGGGCCTATGAAGCGACAAGTTGTAATACTAAATGGGTGGATCATCATCCTTTAGTCAAC GGAGTGTTTAATGTAATGATGATAAATAAAGTGATGTGCACCATCATGTGTAACCCCGGC CTATACTAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTCAAAAAAAAAAAAAAA AA
Homology of Contig U35_80 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |