- Probe CUST_3877_PI390587928
- Source Contig U35_113
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3877_PI390587928 | Hv_44K_v2 | TGTGTAACCCCGGCCTATACTAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTCA | 416 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.064 | 0.024 | 0.246 | 2.022 | 5.182 | 6.821 |
| Raw | 217.204 | 121.286 | 1106.728 | 12706.330 | 12322.617 | 17602.953 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_460.1 | 1434 | 2e-24 | 1179 - 1238 | 100 | 60 / 60 | minus | ABC28925 ABC49398 ABC53003 |
| MLOC | MLOC_23648.1 | 578 | 7e-23 | 204 - 263 | 98 | 59 / 60 | minus | ABC28925 ABC49398 ABC53003 |
| JLOC1 | JLOC1_278.1 | 654 | 8e-25 | 399 - 458 | 100 | 60 / 60 | minus | |
| JLOC1 | JLOC1_16325.1 | 134 | 4e-23 | 26 - 85 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC32562 | 363 | 3e-25 | 291 - 350 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00806 | 947 | 3e-25 | 846 - 905 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00303 | 819 | 3e-25 | 713 - 772 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00293 | 494 | 3e-25 | 417 - 476 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00290 | 854 | 3e-25 | 779 - 838 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00260 | 344 | 3e-25 | 269 - 328 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53003 | 2806 | 1e-23 | 2129 - 2188 | 98 | 59 / 60 | plus | ABC53003 |
| Harvest21 | ABC00242 | 917 | 1e-23 | 833 - 892 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00023 | 831 | 1e-23 | 752 - 811 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC53016 | 1420 | 5e-23 | 1324 - 1382 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC28925 | 296 | 5e-23 | 219 - 277 | 98 | 58 / 59 | plus | ABC28925 |
| Harvest21 | ABC44047 | 359 | 6e-22 | 17 - 76 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC00265 | 641 | 6e-22 | 257 - 316 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_113 | 494 | 3e-25 | 417 - 476 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_107 | 1122 | 3e-25 | 1010 - 1069 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_80 | 1022 | 3e-25 | 947 - 1006 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50693 | 2806 | 1e-23 | 2129 - 2188 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_340 | 1406 | 5e-23 | 1323 - 1381 | 98 | 59 / 60 | plus |
Contig Sequence (494 bp)
>U35_113 494 Hv_44K_v2 GAGCAACACTAGTTAATACCAATCCATCATGAAGACCTTCCTCATCTTTGCACTCCTCGC CATTGTGGCAACAAGTACCATTGCACACCAACCACAACAACCATTCTCGTTCTCGCAGCA ACCACAACAACCATTCCCTCTGCAACCACAACCATTCCCCCAACAACCACAACAACCATT GCCCCAGCCCCAACAACCATTCCGCCAACAAGCAGAACTAATAATTCCCCAGCAACCTCA ACAACCATTGCCTCTGCAGCCACACCAACCATATACACAACAAACCATCTGGAGTATGGT CTAGTCATCAGGGGCCTATGAAGCGACAAGTTGTAATACTAAATGGGTGGATCATCATCC TTTAGTCAACGGAGTGTTTAATGTAATGATGATAAATAAAGTGATGTGCACCATCATGTG TAACCCCGGCCTATACTAGTTCAAATGAGAATAAAAGACAAAGAAAGTTCTTGTCANAAA AAAAAAAAAAAAAA
Homology of Contig U35_113 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |