- Probe CUST_32376_PI390587928
- Source Contig U35_50527
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32376_PI390587928 | Hv_44K_v2 | TACACAACAAACCATTTGGAGTATGGTCTAGTCATCAGGGGCCTATGAAGCGACAAGTTG | 580 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.041 | 0.023 | 0.265 | 2.020 | 4.447 | 5.744 |
| Raw | 98.062 | 78.561 | 825.250 | 8689.387 | 7319.673 | 10311.060 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_460.1 | 1434 | 7e-23 | 1322 - 1381 | 98 | 59 / 60 | minus | ABC28925 ABC49398 ABC53003 |
| JLOC1 | JLOC1_278.1 | 654 | 4e-23 | 542 - 601 | 98 | 59 / 60 | minus | |
| Harvest21 | ABC52719 | 640 | 3e-25 | 581 - 640 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC53003 | 2806 | 1e-23 | 1986 - 2045 | 98 | 59 / 60 | plus | ABC53003 |
| Harvest21 | ABC49397 | 255 | 1e-23 | 177 - 236 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32971 | 350 | 1e-23 | 272 - 331 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC32562 | 363 | 1e-23 | 148 - 207 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00806 | 947 | 1e-23 | 703 - 762 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00303 | 819 | 1e-23 | 570 - 629 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00298 | 697 | 1e-23 | 545 - 604 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00293 | 494 | 1e-23 | 274 - 333 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00290 | 854 | 1e-23 | 636 - 695 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00265 | 641 | 1e-23 | 114 - 173 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00260 | 344 | 1e-23 | 126 - 185 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00242 | 917 | 1e-23 | 690 - 749 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC00023 | 831 | 1e-23 | 609 - 668 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC44047 | 359 | 6e-22 | 160 - 219 | 97 | 58 / 60 | minus | |
| Harvest21 | ABC28925 | 296 | 6e-22 | 76 - 135 | 97 | 58 / 60 | plus | ABC28925 |
| Harvest21 | ABC53016 | 1420 | 2e-21 | 1184 - 1242 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC28949 | 516 | 8e-21 | 459 - 516 | 97 | 56 / 58 | plus | |
| Harvest35 | U35_50527 | 640 | 3e-25 | 581 - 640 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50693 | 2806 | 1e-23 | 1986 - 2045 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_47884 | 255 | 1e-23 | 177 - 236 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37238 | 350 | 1e-23 | 272 - 331 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_113 | 494 | 1e-23 | 274 - 333 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_107 | 1122 | 1e-23 | 867 - 926 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_80 | 1022 | 1e-23 | 804 - 863 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_340 | 1406 | 2e-21 | 1183 - 1241 | 97 | 58 / 60 | plus | |
| Harvest35 | U35_307 | 769 | 8e-21 | 712 - 769 | 97 | 56 / 58 | plus |
Contig Sequence (640 bp)
>U35_50527 640 Hv_44K_v2 ACCCCGATTGCTCGATCGAATCTAGAGCACAGGTGAAGAGAAGGTAGCCGGCGGCGGGCG AGCGGCCAAGTCTCTCAGGTGCCTTCGACGATGGGGTTCCTCTCGGGGGTGGTGATGGGG TTGGTGGTCGGCGTCGTGATTATGGCCGGGTGGAGCCGCGTGATGCAGCGGCGCACCAGG AAGCGCGTCGCCAAGGCTGCGGATATCATGGTCCTTGGGTCTCTTGGCAGGGACGACCTC AAGAAGCTCTGCGGCGACAATTTCCCCAACAACCACAACAAATAATTTTCCAGCAACCCC AACAATCATACCCTGTGCAACCTCAACAGCCATTTCCTCAACCCCAACCAGTCCCCCAGC AGCGACCCCAACAAGCATCCCCCCTACAACCGCAACAACCATTTCCCCAGGGATCAGAAC AAATAATTCCCCAACAACCATTCCCTCTGCAATCACAACCATTCCCCCAACAACCACAAC AACCATTTCCCCAGCCCCAACAACCATTCCGCCAACAAGCAGAACTAATAATTCCCCAGC AACCTCAACAACCATTCCCTCTGCAGCCACACCAACCATATACACAACAAACCATTTGGA GTATGGTCTAGTCATCAGGGGCCTATGAAGCGACAAGTTG
Homology of Contig U35_50527 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |