Matching HORVU genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

HORVU ID	Percentage overlap	BART Gene Direction	HORVU Gene Direction	Overlap Length	Gene Length Difference	Overlapping Status
HORVU7Hr1G106780	95.4	+	+	5201	-250	Containing

Transcripts from Gene BART1_0-u56048

Transcript	Length(bp)	Description
BART1_0-u56048.001	3403	3403 bp MSTRG.56048.1 MSTRG.56048
BART1_0-u56048.002	3452	3452 bp MSTRG.56048.2 MSTRG.56048
BART1_0-u56048.003	3550	3550 bp MSTRG.56048.3 MSTRG.56048
BART1_0-u56048.004	3448	3448 bp MSTRG.56048.4 MSTRG.56048
BART1_0-u56048.005	2828	2828 bp MSTRG.56048.5 MSTRG.56048
BART1_0-u56048.006	2610	2610 bp MSTRG.56048.6 MSTRG.56048
BART1_0-u56048.007	2608	2608 bp MSTRG.56048.7 MSTRG.56048
BART1_0-u56048.008	2815	2815 bp MSTRG.56048.8 MSTRG.56048
BART1_0-u56048.009	2823	2823 bp MSTRG.56048.9 MSTRG.56048
BART1_0-u56048.010	1697	1697 bp MSTRG.56048.10 MSTRG.56048

Exon Structure of BART1_0-u56048

grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons

Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

Database	Hit	Frame	E-value	Score	% Identity	Description
Rice PP7	LOC_Os06g46240.1	+1	0.0	660	344/514 (67%)	protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10	AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR	+1	4e-69	249	145/362 (40%)	Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3	Bradi1g32690.2.p	+1	0.0	1512	780/992 (79%)	pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1

GO Annotation

Generated by PANNZER

GO ID	GO terms
GO:0016021	integral component of membrane
GO:0016567	protein ubiquitination

Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons