Gene Data
Barley RTD
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Matching BART genes

BarleyRTD transcripts were compared to the location of the IBSC 2017 Predicted Transcripts. Overlapping status is classified as Containing (HORVU is smaller than the BART), Contained (BART is smaller than the HORVU), Partial-Overlap (Overlap exists), and Undefined (the BART transcript has no overlapping HORVU).

BART IDPercentage overlapBART Gene DirectionHORVU Gene DirectionOverlap LengthGene Length DifferenceOverlapping Status
BART1_0-u5604895.4++5201-250Containing




Transcripts from Gene HORVU7Hr1G106780

TranscriptLength(bp)Description
HORVU7Hr1G106780.12770gene=HORVU7Hr1G106780 CDS=1-2730
HORVU7Hr1G106780.23054gene=HORVU7Hr1G106780 CDS=1-3054
HORVU7Hr1G106780.32985gene=HORVU7Hr1G106780 CDS=2-1480
HORVU7Hr1G106780.43284gene=HORVU7Hr1G106780 CDS=795-3017
HORVU7Hr1G106780.53295gene=HORVU7Hr1G106780 CDS=1316-3028
HORVU7Hr1G106780.63355gene=HORVU7Hr1G106780 CDS=3-2549
HORVU7Hr1G106780.72590gene=HORVU7Hr1G106780 CDS=1536-2360
HORVU7Hr1G106780.83326gene=HORVU7Hr1G106780 CDS=874-3096
HORVU7Hr1G106780.92790gene=HORVU7Hr1G106780 CDS=1278-2789
HORVU7Hr1G106780.103223gene=HORVU7Hr1G106780 CDS=1363-3075
HORVU7Hr1G106780.112584gene=HORVU7Hr1G106780 CDS=2-1189
HORVU7Hr1G106780.122533gene=HORVU7Hr1G106780 CDS=1227-2531
HORVU7Hr1G106780.132984gene=HORVU7Hr1G106780 CDS=1175-2887
HORVU7Hr1G106780.142655gene=HORVU7Hr1G106780 CDS=1-2655



Exon Structure of HORVU7Hr1G106780


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +3 0.0 662 344/514 (67%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR		 +3 8e-63 230 144/400 (36%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +3 0.0 1495 780/1030 (76%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

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grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons