- Transcript BART1_0-u56048.001
- Transcript IDBART1_0-u56048.001
- Gene IDBART1_0-u56048
Barley RTD
Exon Structure of BART1_0-u56048.001
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 620784544 | 620784449 | + |
| chr7H | 2 | 620784789 | 620784708 | + |
| chr7H | 3 | 620785405 | 620785279 | + |
| chr7H | 4 | 620786395 | 620785866 | + |
| chr7H | 5 | 620786624 | 620786494 | + |
| chr7H | 6 | 620787144 | 620786727 | + |
| chr7H | 7 | 620788394 | 620787261 | + |
| chr7H | 8 | 620788805 | 620788653 | + |
| chr7H | 9 | 620789651 | 620788920 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0.744873 | 1.85306 | 0.967114 |
| morex | ETI | 5.05414 | 3.69699 | 3.66473 |
| morex | LEA | 0.517544 | 0.782349 | 1.53231 |
| morex | EPI | 3.85063 | 3.21562 | 2.50936 |
| morex | ROO | 0.419816 | 1.02278 | 0.299176 |
| morex | ROO2 | 1.81159 | 1.76118 | 0.990169 |
| morex | NOD | 1.54712 | 0.625926 | 2.17822 |
| morex | RAC | 1.89526 | 0.137619 | 1.32961 |
| morex | INF1 | 2.49402 | 2.36508 | 2.30763 |
| morex | INF2 | 5.0234 | 4.61994 | 6.24588 |
| morex | CAR5 | 2.61345 | 3.38367 | 2.26472 |
| morex | CAR15 | 1.8392 | 2.12032 | 1.63225 |
| morex | LEM | 1.63454 | 0.154255 | 1.77088 |
| morex | LOD | 0.558627 | 3.33312 | 2.11804 |
| morex | PAL | 0.259053 | 1.57038 | 1.56276 |
| morex | SEN | 2.22525 | 2.30331 | 1.20487 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g46240.1 | +3 | 8e-177 | 316 | 170/238 (71%) | protein|BTB/POZ domain containing protein, putative, expressed |
| TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+3 | 4e-69 | 249 | 143/360 (40%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
| BRACH PP3 | Bradi1g32690.2.p | +3 | 0.0 | 853 | 467/625 (75%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (3403 bp)
>BART1_0-u56048.001 3403 150831_barley_pseudomolecules GTCCTCATCCTCCTCCAGAGTTCCGGAGACCTGACGCGATGCGCCCCGCGGCCGGGAAGG AGAAGGGCAGGAGGAAGGGCGGCGGCGCCGGCGCCGGCGCCGGGGAGCATCTCCTCACCG ACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGT CTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGA TCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTA TAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACG TTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATT CGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCAC ACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAG TGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAG TTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATC TGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACC ATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAA CAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGGTACATCTGTTTGCTTTA TGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGTGAG CTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCATGTT CTTTTGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATTGTT GAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGGTGT CGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCTAAT GCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAAAGT GATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGATATA CATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCACCAT CCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGGTAGGTA CTAGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATG TGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTC AGTATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGA ACGTTCTATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACA GTTTCAAAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACC ATAATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTC TCCACAATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTG ATGGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTAT TCTACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGT GTAAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAG ATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCT ATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGA AGATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATG GTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCAT CTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGT ACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACA CATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGA AGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACT CCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGG ATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAAT TGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCC GGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGCTCG GGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCG CCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCT ACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCC TCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCG CCTTCGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGC ACCTGTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCA ACATGCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCAGAGGTGACTGA ATGATACGTACGTACATGGGGGACCTGAATGCGCGTCGCCGTGCGCTATGTAGATCCCCC CCCAGGGATTGCTGCCATGCTTTCTTCACAGAGAATAATGTGCAATGTAAGTAGTAGCAT TATCGTCTGGGTTGCCAGAGCGGAGAGCTGTTTGTTGCTCCTGCCTGCATGGCGCACATG GTCACGCGCAAAGGTGCAGGTATCGGAGGACCGACCGGCCTGCTGACACGCACACGCCGC GCCGATCCATCGCCACGCGCATCACAACGGACACTTTATATTT
Protein Sequence (570 aa)
>BART1_0-u56048.001 570 150831_barley_pseudomolecules MRKSSPMKLSKDVQEPALRAVLMMLLSPNGYIQYEASFKLSEGLPYLGDGYLNVLLSSLE SNATRSVATSFDSFKIMTNLMNLACLVLSRPYHNLLNKRNPIDVLSTIIKESLHNHIHIT RSKVTSHLHFCFDGSSCCCYLGEEWEGENIVLFYGLVVLFNLMRSTTLVCVQCKRKLDVG NLCHDCRDQYTEDFLIVLQHALSQSLSSGPKLYIAHILSLFGLCGSPSKLGGKMTSALDN NDLADLELLLSDGESLNAHTAIISARCPKLLPSVKYLLGSDEKVKDEWGKSVYRVQMSDR VDSRALKKILEYTYTGFLMVGDDVVKPVRTLAKYCHLKPLAEMLQKEQPRWNSDYARYDL SAALGPVEHSFSDIILEARSNEEMNCHHGSCQLSTPHVHSHKIVLTMSCDYLRALFRSGM HESFSDVIRVPLGWQALDKLAHWFYSGELPKAAVDCRWNNLGSDEQRAHLNAYAELSSLS EFWFLEGVKEESLVAASSLLESSTSAAAVGFVAFAASLGQWEMVDAGVRSVAHLYPRLRD SGGLERLDDELLNMLRTEYVRYSQHGGRQR