Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u56048.008

ChromosomeExonStartStopDirection
chr7H1620784789620784737+
chr7H2620785405620785279+
chr7H3620786395620785866+
chr7H4620786648620786494+
chr7H5620787133620786727+
chr7H6620788394620787261+
chr7H7620788805620788653+
chr7H8620789175620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB2.816231.936872.62357
morexETI0.04628280.000001038781.77184
morexLEA0.9509971.892562.65004
morexEPI0.5889880.2863241.62917
morexROO1.924110.2908090.0000863639
morexROO20.4909420.9008350.30032
morexNOD1.815860.0003139682.3952
morexRAC0.9998710.9422060.823031
morexINF10.9587911.88233.78298
morexINF22.497262.631191.67246
morexCAR51.834960.5317170
morexCAR1500.003516181.82899
morexLEM1.780532.891860.38661
morexLOD0.0000004311520.1180161.95055
morexPAL0.000001654351.969960.6721
morexSEN0.0000008708650.000000002439230



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +2 5e-179 339 173/284 (61%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR		 +2 1e-56 210 116/284 (41%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +2 0.0 1055 544/684 (80%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2815 bp)

>BART1_0-u56048.008 2815 150831_barley_pseudomolecules
GTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGAT
GGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAA
GCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAG
GAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCA
GTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATT
CGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAG
TTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAGTGACA
GCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCT
AGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATCTGACC
GAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACCATGTA
TGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAACAACG
GTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGGTACATCTGTTTGCTTTATGTGG
CCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGT
GGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTT
GGTGAGTTACATCACTTCAGTTTGGAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTC
ACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGATGATAAATT
GTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCA
TCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTACGGGCCGCTG
CCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGATATGGTTTC
CAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGATATCTAGTGGTGCA
TTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGAT
ATCTTGTGCTTGCTTGCTGGCCACAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTC
CAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGG
ATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGG
CTATTTGAACGTTCTATTGTCATCATTAGAATCAAATGCTACGAGAAGTGTTGCCACATC
TTTTGACAGTTTCAAAATTATGACCAACCTCATGAACCTAGCATGTTTGGTGCTGTCACG
ACCTTACCATAATCTCCTGAACAAGAGGAATCCTATAGATGTGTTGTCCACCATTATCAA
GGAATCTCTCCACAATCATATACATATTACGAGGTCAAAAGTCACTTCCCATCTGCATTT
TTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACAT
AGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTG
TGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGCCATGACTGCAGAGATCAATA
TACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACC
GAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTT
GGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTAGCTGATCTGGAACTTTTGCT
TTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCT
GTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAA
ATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTT
GGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGAC
ACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAG
ATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTC
ATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTC
GTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGA
TTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGT
TCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCC
GAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCT
GAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGA
GGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCG



Protein Sequence (686 aa)

>BART1_0-u56048.008 686 150831_barley_pseudomolecules
MAKICELVGTSHPTSTRIEAFKLCHVLLVSYITSVWRSSKGCSQLMTSRCQPIVEGIIDA
MRAKDDKLLVTEGCRTALVVLRYAGNHHQCFWSNAIDKVLYTILTGRCLSSHQSDQVLCD
DELFDMVSKNFMDIHPYVWDILGYLVVHCTDKHHPVRKGKGHSLHALISCACLLATDVMR
KSSPMKLSKDVQEPALRAVLMMLLSPNGYIQYEASFKLSEGLPYLGDGYLNVLLSSLESN
ATRSVATSFDSFKIMTNLMNLACLVLSRPYHNLLNKRNPIDVLSTIIKESLHNHIHITRS
KVTSHLHFCFDGSSCCCYLGEEWEGENIVLFYGLVVLFNLMRSTTLVCVQCKRKLDVGNL
CHDCRDQYTEDFLIVLQHALSQSLSSGPKLYIAHILSLFGLCGSPSKLGGKMTSALDNND
LADLELLLSDGESLNAHTAIISARCPKLLPSVKYLLGSDEKVKDEWGKSVYRVQMSDRVD
SRALKKILEYTYTGFLMVGDDVVKPVRTLAKYCHLKPLAEMLQKEQPRWNSDYARYDLSA
ALGPVEHSFSDIILEARSNEEMNCHHGSCQLSTPHVHSHKIVLTMSCDYLRALFRSGMHE
SFSDVIRVPLGWQALDKLAHWFYSGELPKAAVDCRWNNLGSDEQRAHLNAYAELSSLSEF
WFLEGVKEESLVAASSLLESSTSAAA