Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u56048.004

ChromosomeExonStartStopDirection
chr7H1620784789620784691+
chr7H2620785405620785279+
chr7H3620786382620785866+
chr7H4620786624620786494+
chr7H5620787144620786727+
chr7H6620788394620787261+
chr7H7620788805620788653+
chr7H8620789788620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB0.2897450.01486150
morexETI0.3632821.327091.30667
morexLEA0.24029800.124748
morexEPI0.4831120.2704040
morexROO0.62217200
morexROO200.6343640.294488
morexNOD00.8525640.944864
morexRAC0.1832680.7557440
morexINF1000
morexINF2000
morexCAR5000
morexCAR15000
morexLEM01.852780
morexLOD00.5250390.859684
morexPAL0.7494170.000000006233150.76798
morexSEN0.6367610.001768980.129755



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +2 0.0 549 281/417 (67%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR		 +1 5e-69 249 143/360 (40%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +1 0.0 853 467/625 (75%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (3448 bp)

>BART1_0-u56048.004 3448 150831_barley_pseudomolecules
NNNNNGCGCCGGCGCCGGCGCCGGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCG
CGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAA
AAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTT
TCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGA
TATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGC
AGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAAT
TTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTAT
CTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAAC
TCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGC
TCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATCACT
GCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGA
CCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGT
TCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAA
TGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAG
GATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCTTCGAAGGGCTGTAGTCAGTT
AATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAGGA
TGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCTGG
GAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTCTTAC
GGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTTGA
TATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGATATCT
AGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTGCA
CGCACTGATATCTTGTGCTTGGTAGGTACTAGCTTGCTGGCCACAGATGTTATGCGCAAA
AGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGATG
ATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAGGT
CTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAATGCT
ACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAACCTA
GCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAATCCTATAGAT
GTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACGAGGTCAAAA
GTCACTTCCCATCTGCATTTTTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGGTGAA
GAGTGGGAGGGTGAAAACATAGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCTTATG
AGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGTGC
CATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAAGT
CAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCCTC
TGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATCTA
GCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCATA
TCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAAAA
GTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATAGT
CGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATGAC
GTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAATG
CTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTGCA
CTTGGACCTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGGAA
ATGAATTGTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAATC
GTGCTGACCATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGAGC
TTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACTGG
TTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCAGC
GACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCTGG
TTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGAGC
ACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCTGGGCCAGTGGGAGATG
GTGGACGCCGGCGTCCGGAGCGTGGCGCACCTGTACCCCCGGCTCCGGGACTCCGGCGGG
CTGGAGCGGCTCGACGACGAGCTGCTCAACATGCTGCGCACCGAGTACGTCCGCTACTCG
CAGCACGGAGGCAGGCAGAGGTGACTGAATGATACGTACGTACATGGGGGACCTGAATGC
GCGTCGCCGTGCGCTATGTAGATCCCCCCCCAGGGATTGCTGCCATGCTTTCTTCACAGA
GAATAATGTGCAATGTAAGTAGTAGCATTATCGTCTGGGTTGCCAGAGCGGAGAGCTGTT
TGTTGCTCCTGCCTGCATGGCGCACATGGTCACGCGCAAAGGTGCAGGTATCGGAGGACC
GACCGGCCTGCTGACACGCACACGCCGCGCCGATCCATCGCCACGCGCATCACAACGGAC
ACTTTATATTTTTTTCCCTTCCTTTTCGCGGATCGTCACAACGGACGCCTGGTCACTTGG
CTCTGGTGATCAACGCTAGTTGCCGAAGTCAGTCATCAACGCTCGGCTCAAAGCAAGCAG
CTAAGATAGTCCCAACGGAACAACCCGC



Protein Sequence (570 aa)

>BART1_0-u56048.004 570 150831_barley_pseudomolecules
MRKSSPMKLSKDVQEPALRAVLMMLLSPNGYIQYEASFKLSEGLPYLGDGYLNVLLSSLE
SNATRSVATSFDSFKIMTNLMNLACLVLSRPYHNLLNKRNPIDVLSTIIKESLHNHIHIT
RSKVTSHLHFCFDGSSCCCYLGEEWEGENIVLFYGLVVLFNLMRSTTLVCVQCKRKLDVG
NLCHDCRDQYTEDFLIVLQHALSQSLSSGPKLYIAHILSLFGLCGSPSKLGGKMTSALDN
NDLADLELLLSDGESLNAHTAIISARCPKLLPSVKYLLGSDEKVKDEWGKSVYRVQMSDR
VDSRALKKILEYTYTGFLMVGDDVVKPVRTLAKYCHLKPLAEMLQKEQPRWNSDYARYDL
SAALGPVEHSFSDIILEARSNEEMNCHHGSCQLSTPHVHSHKIVLTMSCDYLRALFRSGM
HESFSDVIRVPLGWQALDKLAHWFYSGELPKAAVDCRWNNLGSDEQRAHLNAYAELSSLS
EFWFLEGVKEESLVAASSLLESSTSAAAVGFVAFAASLGQWEMVDAGVRSVAHLYPRLRD
SGGLERLDDELLNMLRTEYVRYSQHGGRQR