- Transcript BART1_0-u56048.005
- Transcript IDBART1_0-u56048.005
- Gene IDBART1_0-u56048
Barley RTD
Exon Structure of BART1_0-u56048.005
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 620784789 | 620784713 | + |
| chr7H | 2 | 620785405 | 620785279 | + |
| chr7H | 3 | 620786382 | 620785866 | + |
| chr7H | 4 | 620786648 | 620786494 | + |
| chr7H | 5 | 620787144 | 620786727 | + |
| chr7H | 6 | 620788394 | 620787261 | + |
| chr7H | 7 | 620788805 | 620788653 | + |
| chr7H | 8 | 620789166 | 620788920 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.80703 | 0 |
| morex | ETI | 0 | 0 | 0 |
| morex | LEA | 0 | 0.00108688 | 0 |
| morex | EPI | 0.073226 | 0 | 0 |
| morex | ROO | 0 | 0 | 0 |
| morex | ROO2 | 0.0184862 | 0 | 1.56559 |
| morex | NOD | 0.770197 | 0 | 0.350077 |
| morex | RAC | 0 | 0.000000000564973 | 0 |
| morex | INF1 | 1.59665 | 0 | 0 |
| morex | INF2 | 0.243993 | 0 | 0 |
| morex | CAR5 | 0 | 0 | 0 |
| morex | CAR15 | 0 | 0.000427915 | 0 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0 | 0 |
| morex | SEN | 0 | 0 | 0.0000000246436 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g46240.1 | +1 | 0.0 | 542 | 281/425 (66%) | protein|BTB/POZ domain containing protein, putative, expressed |
| TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+3 | 2e-56 | 210 | 116/284 (41%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
| BRACH PP3 | Bradi1g32690.2.p | +3 | 0.0 | 780 | 418/546 (77%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2828 bp)
>BART1_0-u56048.005 2828 150831_barley_pseudomolecules GGGGAGCATCTCCTCACCGACCGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTC TCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCT GGAATTCAGTCTCACGCGATCAAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAA ATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGT GTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTA GTTTCCAGCATAGGCAATTCGATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTC TCATGCCAGTTGTCGGCACACCAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAAC TGCATATTGAATAGCCTAGTGACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACC TTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGAT GTCCATCCACTGAGTTATCTGACCGAGATGATATCACTGCTAAGAACCATACTGTGGACT TGGCCTTCCTCAAGATACCATGTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACAT TACTGTCTTGCCACTGAAACAACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTA GCTTTATGTGGCCATGGAGCTACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATT TGTGAGCTTGTGGGGACGTCCCATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGC CATGTTCTTTTGGTGAGTTACATCACTTCAGTTTGGAGATCTTCGAAGGGCTGTAGTCAG TTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGATGCAATGCGTGCAAAG GATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTGGTCCTCCGTTATGCT GGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTATTATATACCATTCTT ACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGCGATGATGAGCTATTT GATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGGGATATACTTGGATAT CTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGGAAAGGTCATAGCTTG CACGCACTGATATCTTGTGCTTGGTAGGTACTAGCTTGCTGGCCACAGATGTTATGCGCA AAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTTGAGAGCAGTTCTGA TGATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTTTAAACTTTCAGAAG GTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATCATTAGAATCAAATG CTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGACCAACCTCATGAACC TAGCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAAGAGGAATCCTATAG ATGTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACATATTACGAGGTCAA AAGTCACTTCCCATCTGCATTTTTGTTTTGATGGAAGTTCATGCTGTTGCTATCTCGGTG AAGAGTGGGAGGGTGAAAACATAGTTTTATTCTACGGTCTTGTTGTGCTGTTTAATCTTA TGAGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGATGTTGGAAATCTGT GCCATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCTTCAACATGCTCTAA GTCAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCTGAGTTTGTTTGGCC TCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATTAGATAATAACGATC TAGCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGCTCACACAGCCATCA TATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACTTGGCAGCGATGAAA AAGTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTCTGATCGTGTAGATA GTCGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCTGATGGTAGGCGATG ACGTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAAACCATTGGCAGAAA TGCTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATATGATCTTAGTGCTG CACTTGGACCTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGCTAGGTCAAATGAGG AAATGAATTGTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGTTCATAGCCATAAAA TCGTGCTGACCATGAGCTGCGATTACCTCCGGGCATTATTTCGATCCGGGATGCATGAGA GCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGACAAGCTGGCTCACT GGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATGGAACAACCTGGGCA GCGACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTCCCTGTCCGAGTTCT GGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTCCCTCCTGGAGTCGA GCACGAGC
Protein Sequence (505 aa)
>BART1_0-u56048.005 505 150831_barley_pseudomolecules MRKSSPMKLSKDVQEPALRAVLMMLLSPNGYIQYEASFKLSEGLPYLGDGYLNVLLSSLE SNATRSVATSFDSFKIMTNLMNLACLVLSRPYHNLLNKRNPIDVLSTIIKESLHNHIHIT RSKVTSHLHFCFDGSSCCCYLGEEWEGENIVLFYGLVVLFNLMRSTTLVCVQCKRKLDVG NLCHDCRDQYTEDFLIVLQHALSQSLSSGPKLYIAHILSLFGLCGSPSKLGGKMTSALDN NDLADLELLLSDGESLNAHTAIISARCPKLLPSVKYLLGSDEKVKDEWGKSVYRVQMSDR VDSRALKKILEYTYTGFLMVGDDVVKPVRTLAKYCHLKPLAEMLQKEQPRWNSDYARYDL SAALGPVEHSFSDIILEARSNEEMNCHHGSCQLSTPHVHSHKIVLTMSCDYLRALFRSGM HESFSDVIRVPLGWQALDKLAHWFYSGELPKAAVDCRWNNLGSDEQRAHLNAYAELSSLS EFWFLEGVKEESLVAASSLLESSTS