Transcript Data
Barley RTD
Links



Exon Structure of BART1_0-u56048.009

ChromosomeExonStartStopDirection
chr7H1620784789620784748+
chr7H2620785405620785279+
chr7H3620786382620785866+
chr7H4620786648620786494+
chr7H5620787133620786727+
chr7H6620788394620787261+
chr7H7620788805620788653+
chr7H8620789207620788920+


grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



Salmon TPM Values: sixteensamplesmorex

These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials


SampleTreatmentRep 1Rep 2Rep 3
morexEMB01.288972.93108
morexETI4.027065.899095.61418
morexLEA2.165871.909291.7558
morexEPI0.6666072.451881.0729
morexROO0.4951472.339121.71694
morexROO21.226690.2772140.956106
morexNOD1.764072.989510.867645
morexRAC1.663581.416481.64565
morexINF12.208693.892633.14246
morexINF28.063794.105465.6028
morexCAR52.750413.750353.95094
morexCAR151.548392.193750
morexLEM2.294080.3644322.6825
morexLOD4.225461.663572.22141
morexPAL2.608121.581231.82325
morexSEN1.826961.807972.65934



Homology to Model Species (BLASTX to E-value < 1e-30)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP7 LOC_Os06g46240.1 +2 0.0 644 324/498 (65%) protein|BTB/POZ domain containing protein, putative, expressed
TAIR PP10 AT1G04390 @ ARAPORT
AT1G04390.1 @ TAIR		 +2 8e-57 211 116/284 (41%) Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849
BRACH PP3 Bradi1g32690.2.p +2 0.0 1417 723/911 (79%) pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1




Barley PseudoMolecules GBrowse

Click here to see more tracks within GBrowse -->



grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons



CDS Sequence (2823 bp)

>BART1_0-u56048.009 2823 150831_barley_pseudomolecules
CCGCGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCTGATGGCCACGGTGC
AAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGATCAAAGCAGTGACTGC
TTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTATAAAGGAGTCAATTTC
GGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTTTCAGTTCTGATCCA
AGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCGATTCGGCAATACTC
AATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCACACCAGTTACCTACGGC
TATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAGTGACAGCGAGAGGTTC
AACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAGTTGCTAGTATTGTTTC
AGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATCTGACCGAGATGATATC
ACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACCATGTATGGAGTAACGG
CGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAACAACGGTTGTAGCTAA
AGTTCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGAGCTACGATCCTTCTCAA
GAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCCCATCCGACTAGTAC
TAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGGTGAGTTACATCACTTCAGTTTG
GAGATCTTCGAAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGG
CATAATCGATGCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTAC
TGCACTGGTGGTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCTAATGCCAT
TGATAAAGTATTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCA
AGTTTTGTGCGATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGATATACATCC
ATACGTCTGGGATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGT
AAGGAAAGGGAAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGCTTGCTGGCCAC
AGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTTT
GAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGGCAAGTTT
TAAACTTTCAGAAGGTCTTCCGTATTTGGGTGATGGCTATTTGAACGTTCTATTGTCATC
ATTAGAATCAAATGCTACGAGAAGTGTTGCCACATCTTTTGACAGTTTCAAAATTATGAC
CAACCTCATGAACCTAGCATGTTTGGTGCTGTCACGACCTTACCATAATCTCCTGAACAA
GAGGAATCCTATAGATGTGTTGTCCACCATTATCAAGGAATCTCTCCACAATCATATACA
TATTACGAGGTCAAAAGTCACTTCCCATCTGCATTTTTGTTTTGATGGAAGTTCATGCTG
TTGCTATCTCGGTGAAGAGTGGGAGGGTGAAAACATAGTTTTATTCTACGGTCTTGTTGT
GCTGTTTAATCTTATGAGGAGCACTACTTTAGTTTGTGTTCAGTGTAAGAGGAAGTTGGA
TGTTGGAAATCTGTGCCATGACTGCAGAGATCAATATACAGAAGATTTTCTTATAGTTCT
TCAACATGCTCTAAGTCAAAGCTTGAGTTCTGGACCGAAGCTCTATATTGCACACATCCT
GAGTTTGTTTGGCCTCTGTGGTTCTCCAAGCAAGTTGGGCGGGAAGATGACTAGTGCATT
AGATAATAACGATCTAGCTGATCTGGAACTTTTGCTTTCAGATGGTGAATCTCTAAATGC
TCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGTAAAATATCTACT
TGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTACCGAGTTCAGATGTC
TGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACATATACTGGTTTTCT
GATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAGTATTGTCACCTGAA
ACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCCGATTATGCCAGATA
TGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGATATAATTTTGGAGGC
TAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTGTCAACCCCGCACGT
TCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGGGCATTATTTCGATC
CGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTGGCAAGCGCTGGA
CAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGTCGACTGCCGATG
GAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGCGGAGCTGTCGTC
CCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGTCGCGGCGTCGTC
CCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTTCGCGGCCAGCCT
GGG



Protein Sequence (940 aa)

>BART1_0-u56048.009 940 150831_barley_pseudomolecules
RARLHDALSLGLARSDGHGAKKWQSTDAGIQSHAIKAVTAFLGCLSTEMLRLPPIKESIS
DILVLLEGVLQTKNVSVLIQAADVSSKLVSSIGNSIRQYSILEIVSPLSCQLSAHQLPTA
ISCARAINCILNSLVTARGSTHAEILETLERTNAVASIVSALQSYTLDVHPLSYLTEMIS
LLRTILWTWPSSRYHVWSNGDLMGKLAHYCLATETTVVAKVLRLYAALALCGHGATILLK
NEVLMAKICELVGTSHPTSTRIEAFKLCHVLLVSYITSVWRSSKGCSQLMTSRCQPIVEG
IIDAMRAKDDKLLVTEGCRTALVVLRYAGNHHQCFWSNAIDKVLYTILTGRCLSSHQSDQ
VLCDDELFDMVSKNFMDIHPYVWDILGYLVVHCTDKHHPVRKGKGHSLHALISCACLLAT
DVMRKSSPMKLSKDVQEPALRAVLMMLLSPNGYIQYEASFKLSEGLPYLGDGYLNVLLSS
LESNATRSVATSFDSFKIMTNLMNLACLVLSRPYHNLLNKRNPIDVLSTIIKESLHNHIH
ITRSKVTSHLHFCFDGSSCCCYLGEEWEGENIVLFYGLVVLFNLMRSTTLVCVQCKRKLD
VGNLCHDCRDQYTEDFLIVLQHALSQSLSSGPKLYIAHILSLFGLCGSPSKLGGKMTSAL
DNNDLADLELLLSDGESLNAHTAIISARCPKLLPSVKYLLGSDEKVKDEWGKSVYRVQMS
DRVDSRALKKILEYTYTGFLMVGDDVVKPVRTLAKYCHLKPLAEMLQKEQPRWNSDYARY
DLSAALGPVEHSFSDIILEARSNEEMNCHHGSCQLSTPHVHSHKIVLTMSCDYLRALFRS
GMHESFSDVIRVPLGWQALDKLAHWFYSGELPKAAVDCRWNNLGSDEQRAHLNAYAELSS
LSEFWFLEGVKEESLVAASSLLESSTSAAAVGFVAFAASL