- Transcript BART1_0-u56048.007
- Transcript IDBART1_0-u56048.007
- Gene IDBART1_0-u56048
Barley RTD
Exon Structure of BART1_0-u56048.007
| Chromosome | Exon | Start | Stop | Direction |
|---|---|---|---|---|
| chr7H | 1 | 620784789 | 620784734 | + |
| chr7H | 2 | 620785405 | 620785279 | + |
| chr7H | 3 | 620786382 | 620785866 | + |
| chr7H | 4 | 620786624 | 620786494 | + |
| chr7H | 5 | 620787144 | 620786727 | + |
| chr7H | 6 | 620787384 | 620787261 | + |
| chr7H | 7 | 620788394 | 620788034 | + |
| chr7H | 8 | 620788805 | 620788653 | + |
| chr7H | 9 | 620789640 | 620788920 | + |
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
Salmon TPM Values: sixteensamplesmorex
These TPM values were generated by using the RNA-seq data from a 16-tissue experiment in Morex (published here) were calculated using Salmon (version Salmon-0.8.2) using BaRTv1.0-QUASI as the reference transcript dataset. Click here for more information about the RNA-seq experiment and materials
| Sample | Treatment | Rep 1 | Rep 2 | Rep 3 |
|---|---|---|---|---|
| morex | EMB | 0 | 0.336235 | 0.421718 |
| morex | ETI | 0 | 0 | 0.8448 |
| morex | LEA | 0.605013 | 0 | 0.237104 |
| morex | EPI | 0 | 0 | 0 |
| morex | ROO | 0.0000000032708 | 0 | 0 |
| morex | ROO2 | 0 | 0 | 0.000000000546264 |
| morex | NOD | 0 | 0 | 0 |
| morex | RAC | 0.171497 | 0 | 0 |
| morex | INF1 | 0.0417794 | 0 | 0 |
| morex | INF2 | 0.263805 | 0.462051 | 0.129149 |
| morex | CAR5 | 0 | 0 | 0.00359863 |
| morex | CAR15 | 0.205218 | 0 | 0.42085 |
| morex | LEM | 0 | 0 | 0 |
| morex | LOD | 0 | 0 | 0 |
| morex | PAL | 0 | 0.000000000224915 | 0 |
| morex | SEN | 0 | 0 | 0 |
Homology to Model Species (BLASTX to E-value < 1e-30)
| Database | Hit | Frame | E-value | Score | % Identity | Description |
|---|---|---|---|---|---|---|
| Rice PP7 | LOC_Os06g46240.1 | +1 | 9e-177 | 541 | 261/393 (66%) | protein|BTB/POZ domain containing protein, putative, expressed |
| TAIR PP10 | AT1G04390 @ ARAPORT AT1G04390.1 @ TAIR |
+2 | 7e-65 | 233 | 124/315 (39%) | Symbols: | BTB/POZ domain-containing protein | chr1:1179678-1183615 REVERSE LENGTH=849 |
| BRACH PP3 | Bradi1g32690.2.p | +1 | 0.0 | 657 | 323/412 (78%) | pacid=32804374 transcript=Bradi1g32690.2 locus=Bradi1g32690 ID=Bradi1g32690.2.v3.1 annot-version=v3.1 |
Barley PseudoMolecules GBrowse
Click here to see more tracks within GBrowse -->
grey: non-coding, green: Barley Morex IBSC 2017 Transcript CDS, red: Barley RTD exons
CDS Sequence (2608 bp)
>BART1_0-u56048.007 2608 150831_barley_pseudomolecules CGCGTCCTCTCCCTCCGCGCACGCCTGCACGACGCCCTCTCCCTCGGCCTCGCCAGGTCT GATGGCCACGGTGCAAAAAAATGGCAGTCTACTGATGCTGGAATTCAGTCTCACGCGATC AAAGCAGTGACTGCTTTTCTCGGTTGTTTGTCAACTGAAATGCTGCGGCTTCCTCCTATA AAGGAGTCAATTTCGGATATTCTCGTACTCTTGGAAGGTGTTCTTCAGACAAAGAACGTT TCAGTTCTGATCCAAGCAGCAGATGTGAGCTCAAAGTTAGTTTCCAGCATAGGCAATTCG ATTCGGCAATACTCAATTTTGGAGATTGTTTCGCCCCTCTCATGCCAGTTGTCGGCACAC CAGTTACCTACGGCTATCTCATGTGCAAGGGCAATAAACTGCATATTGAATAGCCTAGTG ACAGCGAGAGGTTCAACTCATGCAGAAATTTTGGAAACCTTGGAGAGAACCAATGCAGTT GCTAGTATTGTTTCAGCTCTGCAGAGTTACACTCTTGATGTCCATCCACTGAGTTATCTG ACCGAGATGATATCACTGCTAAGAACCATACTGTGGACTTGGCCTTCCTCAAGATACCAT GTATGGAGTAACGGCGACCTGATGGGGAAGTTAGCACATTACTGTCTTGCCACTGAAACA ACGGTTGTAGCTAAAGTTCTGAGGCTGTATGCTGCTTTAGCTTTATGTGGCCATGGAGCT ACGATCCTTCTCAAGAATGAAGTCTTAATGGCTAAGATTTGTGAGCTTGTGGGGACGTCC CATCCGACTAGTACTAGGATTGAAGCGTTCAAACTCTGCCATGTTCTTTTGAGATCTTCG AAGGGCTGTAGTCAGTTAATGACTTCACGTTGCCAGCCTATTGTTGAAGGCATAATCGAT GCAATGCGTGCAAAGGATGATAAATTGTTAGTAACAGAGGGGTGTCGTACTGCACTGGTG GTCCTCCGTTATGCTGGGAATCATCATCAATGCTTTTGGTCTAATGCCATTGATAAAGTA TTATATACCATTCTTACGGGCCGCTGCCTCTCCTCGCATCAAAGTGATCAAGTTTTGTGC GATGATGAGCTATTTGATATGGTTTCCAAAAACTTCATGGATATACATCCATACGTCTGG GATATACTTGGATATCTAGTGGTGCATTGCACTGACAAGCACCATCCTGTAAGGAAAGGG AAAGGTCATAGCTTGCACGCACTGATATCTTGTGCTTGGTAGGTACTAGCTTGCTGGCCA CAGATGTTATGCGCAAAAGCAGCCCCATGAAATTGTCCAAAGATGTGCAGGAGCCGGCTT TGAGAGCAGTTCTGATGATGCTTCTCTCTCCCAATGGATATATTCAGTATGAGATGGTGA ATCTCTAAATGCTCACACAGCCATCATATCAGCGAGGTGTCCTAAGCTGTTGCCATCTGT AAAATATCTACTTGGCAGCGATGAAAAAGTTAAAGATGAATGGGGAAAATCAGTGTACCG AGTTCAGATGTCTGATCGTGTAGATAGTCGCGCCTTGAAGAAGATTTTGGAGTACACATA TACTGGTTTTCTGATGGTAGGCGATGACGTTGTTAAACCAGTAAGGACACTTGCGAAGTA TTGTCACCTGAAACCATTGGCAGAAATGCTTCAGAAAGAGCAACCCAGATGGAACTCCGA TTATGCCAGATATGATCTTAGTGCTGCACTTGGACCTGTTGAGCATTCATTCTCGGATAT AATTTTGGAGGCTAGGTCAAATGAGGAAATGAATTGTCACCATGGGTCGTGCCAATTGTC AACCCCGCACGTTCATAGCCATAAAATCGTGCTGACCATGAGCTGCGATTACCTCCGGGC ATTATTTCGATCCGGGATGCATGAGAGCTTCTCCGACGTTATCAGGGTTCCGCTCGGGTG GCAAGCGCTGGACAAGCTGGCTCACTGGTTCTACTCGGGCGAGCTGCCGAAAGCCGCCGT CGACTGCCGATGGAACAACCTGGGCAGCGACGAGCAGCGCGCCCACCTGAACGCCTACGC GGAGCTGTCGTCCCTGTCCGAGTTCTGGTTCCTGGAGGGGGTGAAGGAGGAGAGCCTCGT CGCGGCGTCGTCCCTCCTGGAGTCGAGCACGAGCGCCGCCGCGGTCGGGTTCGTCGCCTT CGCGGCCAGCCTGGGCCAGTGGGAGATGGTGGACGCCGGCGTCCGGAGCGTGGCGCACCT GTACCCCCGGCTCCGGGACTCCGGCGGGCTGGAGCGGCTCGACGACGAGCTGCTCAACAT GCTGCGCACCGAGTACGTCCGCTACTCGCAGCACGGAGGCAGGCAGAGGTGACTGAATGA TACGTACGTACATGGGGGACCTGAATGCGCGTCGCCGTGCGCTATGTAGATCCCCCCCCA GGGATTGCTGCCATGCTTTCTTCACAGAGAATAATGTGCAATGTAAGTAGTAGCATTATC GTCTGGGTTGCCAGAGCGGAGAGCTGTTTGTTGCTCCTGCCTGCATGGCGCACATGGTCA CGCGCAAAGGTGCAGGTATCGGAGGACCGACCGGCCTGCTGACACGCACACGCCGCGCCG ATCCATCGCCACGCGCATCACAACGGAC
Protein Sequence (413 aa)
>BART1_0-u56048.007 413 150831_barley_pseudomolecules RVLSLRARLHDALSLGLARSDGHGAKKWQSTDAGIQSHAIKAVTAFLGCLSTEMLRLPPI KESISDILVLLEGVLQTKNVSVLIQAADVSSKLVSSIGNSIRQYSILEIVSPLSCQLSAH QLPTAISCARAINCILNSLVTARGSTHAEILETLERTNAVASIVSALQSYTLDVHPLSYL TEMISLLRTILWTWPSSRYHVWSNGDLMGKLAHYCLATETTVVAKVLRLYAALALCGHGA TILLKNEVLMAKICELVGTSHPTSTRIEAFKLCHVLLRSSKGCSQLMTSRCQPIVEGIID AMRAKDDKLLVTEGCRTALVVLRYAGNHHQCFWSNAIDKVLYTILTGRCLSSHQSDQVLC DDELFDMVSKNFMDIHPYVWDILGYLVVHCTDKHHPVRKGKGHSLHALISCAW