barSeed - Barley Seed Development Database

Probe CUST_64_PI415269222

Source Contig TA47918_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_64_PI415269222	Hv_44K_v2	CTGAACTTTTATCAAAGGGTTTGTCACATGCTAAAGAGGCTTTTCTTACGGGCTGCTCGG	941	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362294	1381	6e-24	400 - 458	100	59 / 59	plus	ABC01965 ABC01966 ABC01968 ABC01972 ABC01976 ABC01977 ABC02389 ABC11496 ABC12720 ABC24714 ABC32938 ABC34124 ABC41020 ABC43517 ABC49701
MLOC	AK377159	1521	6e-24	835 - 893	100	59 / 59	plus	ABC24714
Harvest21	ABC16190	1089	1e-24	961 - 1019	100	59 / 59	plus
Harvest35	U35_21645	1089	1e-24	961 - 1019	100	59 / 59	plus

Contig Sequence (1037 bp)

>TA47918_4513 1037 Hv_44K_v2
GATTAATGATTTATCTGCATATTAATTTCCAGATAAAACATAATCTACTGCAATGGGTAA
ATGCTCGCTGTCACTTGGCAACTCTCTCTTGCAGGCGGGCCACACCTGGAATGGCGGCTC
GTGGTCGTGGACTGGTGCACAGCCACCGCAGGCGGCGGCGCTTCCGCCACCGTCGGAAAC
TTCCAAAGTCGACACGGCGGCGGCCGATCCCCGCCATTGCTCGCGCTCCACGCCCCACCA
CGGCTAGGTACTACTCCATTATAGTAAAGACTCGCGCATGTGCTGTCGTCCTTGTTTCGC
CTGATAAAGAAATGCCACCGGGAAGTCGTCGCCGATGCGGCCGCGGCCAGATCCACATCC
ACCAACCACCGCTCGCTGTCGCCCGTCGCCACCGGTCTTCCCCTCATGCATCCCCTCTCC
TCCTCCGCCTCCGCCGCCCCGGCGACGCACCACCGGGGCCGCGGCCTTCGCCTTCGCGCT
CCTCGCCGCCGCATTCTTCCTCACCCCCTGCCGCGACGCCTCCGCCCCGTCCTCCACGTC
CTACCCGTCCTACGGCCACCGGCTCCCCACGCTCGTCGACCTCACCCTCATCGCCGGCGC
CAGGGAGAAGAGCGTCGTGTGCCTCGACGGGACCCCGCCTGGGTACCACTGGCTCCCGGG
GTTCGGGGAGGGGTCCGACAAGTGGCTCCTCCACTTGGAGGGTGGAAGCTGGTGCAGGAA
CCTGACATGGTGCGCTCAGCGCAAGGAAACAAATCTAGGTTCCTCTGACCACATGGAAAG
GCGGGTTGAGTTCGTTGGCATCTTGAGCGACGACGAACTGCAAAATCCAGACTTTTACAA
TTGGAATAAGTGAAGGTAAGGTATTGTGATGGTGCATTATTTTTCTGAAAATTTCGAAGA
AGGATTTCAAGAGGTCAACGCATCTTGGGATGAGGTTATGCCTGAACTTTTATCAAAGGG
TTTGTCACATGCTAAAGAGGCTTTTCTTACGGGCTGCTCGGGTGGTGGTCTATCCACTTA
CATTCACTGTGATGACT

Homology of Contig TA47918_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g74330.1	431	5e-72	protein\|pectinacetylesterase domain containing protein, expressed
Brachypodium v1_2	Bradi2g62410.1	442	4e-83
Arabidopsis v10	None