barSeed - Barley Seed Development Database

Probe CUST_39512_PI390587928

Source Contig U35_13922

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_39512_PI390587928	Hv_44K_v2	AGAGCGGCATTGTATCTCTGATTTCTGTGGGAATCTTAGCAATTCTCTTGTTCTAAAAAA	641	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251852.1	741	9e-22	649 - 703	100	55 / 55	plus	ABC00028 ABC00054 ABC00076 ABC00085 ABC00096 ABC00118 ABC00119 ABC00137 ABC00145 ABC00154 ABC00158 ABC00167 ABC00188 ABC00286 ABC00350 ABC00412 ABC00414 ABC00427 ABC00440 ABC00443 ABC00494 ABC00550 ABC00571 ABC00648 ABC00656 ABC00671 ABC00709 ABC00869 ABC17259 ABC34584 ABC44597
MLOC	MLOC_5929.1	299	9e-22	62 - 116	100	55 / 55	minus	ABC00145 ABC00167
JLOC1	JLOC1_3847.1	536	5e-22	222 - 276	100	55 / 55	minus
Harvest21	ABC00167	653	3e-25	12 - 71	100	60 / 60	minus	ABC00167
Harvest35	U35_13922	712	3e-25	642 - 701	100	60 / 60	plus

Contig Sequence (712 bp)

>U35_13922 712 Hv_44K_v2
TCAGAGCAGAGCAGAGCAGCGCGCAGTAATCCCAATCCAGCACCGGCTCCCCACACCTCG
AGTGGTTTGCCGTTCGCCGGAGAAGCAGCAAGAAGATGGCCGGAAGGAAGGGCGGCGAGA
GGAAGAAGGCGGTGACCCGCTCCGTGAAGGCCGGGCTCCAGTTCCCCGTCGGCCGCATCG
GGCGCTACCTCAAGAAGGGCCGCTACGCGCAGCGCGTCGGCTCCGGCGCCCCCGTCTACC
TCGCCGCCGTCCTCGAGTACCTCGCCGCCGAGCTGCTGGAGCTCGCCGGCAACGCCGCCA
AGGACAACAAGAAGACACGCATCATCCCGCGCCACCTGCTGCTCGCCGTCCGCAACGACC
AGGAGCTCGGCAGGCTGCTCGCCGGCGTCACCATCGCCCACGGCGGCGTCATCCCCAACA
TCAACTCCGTGCTGCTCCCCAAGAAGTCCCCCGCTGCCGCCGAGAAGGAGGCCACCAAGT
CGCCCAAGAAGAAGGCCGCCACCAAGTCTCCCAAGAAGAAGACCGCGGCCACCAAAGAGT
AGCCGTCCCCATGGCCCTAGCCAGTGTGTACTCTGTTCCATTTCTCATGGACAAGATGAC
TAGTCTGTAGGTAGCTGCCCTTTTGTCAGATTCGTCGAGCAAGAGCGGCATTGTATCTCT
GATTTCTGTGGGAATCTTAGCAATTCTCTTGTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_13922 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None